miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 63980 0.66 0.763597
Target:  5'- --cCGCCGugacccgcaAAGCgGGCuccgucuGGGUCCUGCGg -3'
miRNA:   3'- ucaGCGGC---------UUCGgCCG-------CCUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 65173 0.75 0.26029
Target:  5'- uGG-CGCCGAGaCCGGCGGGUgCCgGCGa -3'
miRNA:   3'- -UCaGCGGCUUcGGCCGCCUA-GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 65240 0.68 0.633216
Target:  5'- cGGUCGCCGcGG-CGGCG-AUCCgGCc -3'
miRNA:   3'- -UCAGCGGCuUCgGCCGCcUAGGgCGc -5'
10740 3' -61.8 NC_002794.1 + 65923 0.72 0.390631
Target:  5'- cGUCGCCGgcGgCGGUGGcgUCgGCGg -3'
miRNA:   3'- uCAGCGGCuuCgGCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 66572 0.74 0.290771
Target:  5'- -aUCGCCGgcGCCGGCGGcagCCC-CGa -3'
miRNA:   3'- ucAGCGGCuuCGGCCGCCua-GGGcGC- -5'
10740 3' -61.8 NC_002794.1 + 67213 0.66 0.764487
Target:  5'- cGGUgCGCuCGgcGCCgGGCGGcuaaCCGCGu -3'
miRNA:   3'- -UCA-GCG-GCuuCGG-CCGCCuag-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 68765 0.66 0.728145
Target:  5'- gGGcCGCCGGGgcGCCGGacgccCGGcUCUCGCGc -3'
miRNA:   3'- -UCaGCGGCUU--CGGCC-----GCCuAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 68935 0.67 0.652431
Target:  5'- cGUCGCCcgcGGGCC-GCGGcgCCgGCGc -3'
miRNA:   3'- uCAGCGGc--UUCGGcCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 69729 0.66 0.764487
Target:  5'- gAGUgcCGCCGGagcgccacGGCCGGCGacg-CCGCGg -3'
miRNA:   3'- -UCA--GCGGCU--------UCGGCCGCcuagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 70270 0.66 0.741023
Target:  5'- cGGagGCCGcgaaggccggagagcAGGCCGGgGGggCCCGgGc -3'
miRNA:   3'- -UCagCGGC---------------UUCGGCCgCCuaGGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 71100 0.7 0.48329
Target:  5'- cGGUCGCCGGcggccuGGCCGGagaGGcgCUCGUu -3'
miRNA:   3'- -UCAGCGGCU------UCGGCCg--CCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 71953 0.66 0.718858
Target:  5'- -cUCGCCGAcguaCCGGCGcaucagccGGUCCCgGCGg -3'
miRNA:   3'- ucAGCGGCUuc--GGCCGC--------CUAGGG-CGC- -5'
10740 3' -61.8 NC_002794.1 + 72338 0.71 0.474416
Target:  5'- cAGUCGgUGGAGCCGGUGGcgcugcaccGUCUgCGCGu -3'
miRNA:   3'- -UCAGCgGCUUCGGCCGCC---------UAGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 72418 0.72 0.382796
Target:  5'- --cCGCCGcggcggaggagGAGCCGGCGGAgggaCCgGCGg -3'
miRNA:   3'- ucaGCGGC-----------UUCGGCCGCCUa---GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 72926 0.72 0.39857
Target:  5'- cGcCGUCGGAGCCGGCG--UCCgCGCGc -3'
miRNA:   3'- uCaGCGGCUUCGGCCGCcuAGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 75373 0.67 0.656268
Target:  5'- --cCGCCGcGGCCGGCGGcggcggccucuccccGUCCCu-- -3'
miRNA:   3'- ucaGCGGCuUCGGCCGCC---------------UAGGGcgc -5'
10740 3' -61.8 NC_002794.1 + 77965 0.67 0.680176
Target:  5'- cGUCGCCGAGccgacuccuccGCCucggaacGGCGGGcguuguUCCgGCGg -3'
miRNA:   3'- uCAGCGGCUU-----------CGG-------CCGCCU------AGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 80040 0.73 0.345219
Target:  5'- -cUCGCCGAcaguGCCGGCGcGAg-CCGCGg -3'
miRNA:   3'- ucAGCGGCUu---CGGCCGC-CUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 80446 0.69 0.585276
Target:  5'- cGGcCGCCGGcccGUCGGCGG--CCCGCu -3'
miRNA:   3'- -UCaGCGGCUu--CGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 81570 0.66 0.745584
Target:  5'- cGcCGCCGc-GCCGGacgaagaagaagaCGGA-CCCGCGg -3'
miRNA:   3'- uCaGCGGCuuCGGCC-------------GCCUaGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.