miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 82668 0.71 0.448298
Target:  5'- --aCGCCGc-GCCGGCGGAUCgCaCGCc -3'
miRNA:   3'- ucaGCGGCuuCGGCCGCCUAG-G-GCGc -5'
10740 3' -61.8 NC_002794.1 + 82737 0.66 0.746493
Target:  5'- -cUCGCCGcGAGCCGccgccaccgccGCGGAcucgCuCCGCGa -3'
miRNA:   3'- ucAGCGGC-UUCGGC-----------CGCCUa---G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 86753 0.66 0.737359
Target:  5'- --aCGagCGAAGCCgGGUGGAUCgCCGgGa -3'
miRNA:   3'- ucaGCg-GCUUCGG-CCGCCUAG-GGCgC- -5'
10740 3' -61.8 NC_002794.1 + 86832 0.71 0.474416
Target:  5'- -cUCGCCGGgaucgGGUCGGCGGc-CCCGCc -3'
miRNA:   3'- ucAGCGGCU-----UCGGCCGCCuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 86905 0.67 0.694422
Target:  5'- gGGcCGCCGAcccggugacgcccguGGCgGGCaggcggggcgGGAUCCgGCGa -3'
miRNA:   3'- -UCaGCGGCU---------------UCGgCCG----------CCUAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 88362 0.78 0.16766
Target:  5'- --gCGCCGAAaCCGGCGGAcUCCCGCc -3'
miRNA:   3'- ucaGCGGCUUcGGCCGCCU-AGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 90225 0.66 0.737359
Target:  5'- --gCGCCGGAGCCccgccuGUGGucCCCGCGc -3'
miRNA:   3'- ucaGCGGCUUCGGc-----CGCCuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 90462 0.71 0.473533
Target:  5'- -uUCGgCGAGGCCgcgcgcGGCGGGgccgccgUCCCGCGc -3'
miRNA:   3'- ucAGCgGCUUCGG------CCGCCU-------AGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 90773 0.66 0.764487
Target:  5'- --gCGCCGcuGCUGGUGGA-CCUGaCGg -3'
miRNA:   3'- ucaGCGGCuuCGGCCGCCUaGGGC-GC- -5'
10740 3' -61.8 NC_002794.1 + 90902 0.69 0.585276
Target:  5'- --aCGCCGAGGCCauCGuGUCCCGCa -3'
miRNA:   3'- ucaGCGGCUUCGGccGCcUAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 90953 0.68 0.623604
Target:  5'- uGUgCGCCGAGGCC--CGGG-CCCGCu -3'
miRNA:   3'- uCA-GCGGCUUCGGccGCCUaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 91868 0.66 0.755538
Target:  5'- gGGUC-CCGggGgUGGCGGcggcggCCGCGa -3'
miRNA:   3'- -UCAGcGGCuuCgGCCGCCuag---GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 92868 0.66 0.718858
Target:  5'- --aCGCCGccucGGGCCGGCacGUCCUGCu -3'
miRNA:   3'- ucaGCGGC----UUCGGCCGccUAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 94005 0.81 0.108329
Target:  5'- cGG-CGCCGGcggcgGGCCGGCGGGUUCCGCc -3'
miRNA:   3'- -UCaGCGGCU-----UCGGCCGCCUAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 95009 0.7 0.528779
Target:  5'- uGUCGCUGAuggggcGGCUGuGCGGcAUCUCGCc -3'
miRNA:   3'- uCAGCGGCU------UCGGC-CGCC-UAGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 96742 0.68 0.591959
Target:  5'- --cCGCCGGcgcgucucgcaagcGGCCGGCGGucgagucgCCCGgGg -3'
miRNA:   3'- ucaGCGGCU--------------UCGGCCGCCua------GGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 96904 0.67 0.690632
Target:  5'- cGUCgGgCGGAGgUGGCGGAggcgCCgGCGa -3'
miRNA:   3'- uCAG-CgGCUUCgGCCGCCUa---GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 100233 0.69 0.566267
Target:  5'- aGGUCuUCGAGGUCGGCGucagCCCGCu -3'
miRNA:   3'- -UCAGcGGCUUCGGCCGCcua-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 101482 0.66 0.718858
Target:  5'- --cCGcCCGAAacGCCGGCGGccgGUCCgaGCGg -3'
miRNA:   3'- ucaGC-GGCUU--CGGCCGCC---UAGGg-CGC- -5'
10740 3' -61.8 NC_002794.1 + 101582 0.71 0.474416
Target:  5'- cGGcCGCCGcGGCCGGgGGGgcgggugccggCCCGCc -3'
miRNA:   3'- -UCaGCGGCuUCGGCCgCCUa----------GGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.