miRNA display CGI


Results 41 - 60 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 141651 0.73 0.359927
Target:  5'- cGUgGCCGcggccGCCGGCGGGUCgaGCGa -3'
miRNA:   3'- uCAgCGGCuu---CGGCCGCCUAGggCGC- -5'
10740 3' -61.8 NC_002794.1 + 141599 0.71 0.456916
Target:  5'- cGUCGCCGGgcGGCuCGGCGaccggCUCGCGg -3'
miRNA:   3'- uCAGCGGCU--UCG-GCCGCcua--GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 141142 1.08 0.001421
Target:  5'- gAGUCGCCGAAGCCGGCGGAUCCCGCGa -3'
miRNA:   3'- -UCAGCGGCUUCGGCCGCCUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 140015 0.72 0.406611
Target:  5'- aGGcCGCgGAGGCC-GCGGccCCCGCGg -3'
miRNA:   3'- -UCaGCGgCUUCGGcCGCCuaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 138413 0.66 0.761813
Target:  5'- cGUCGCCGGccgccgacucgucgAGCCgcgguggcGGCGGcgccucggCCUGCGa -3'
miRNA:   3'- uCAGCGGCU--------------UCGG--------CCGCCua------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 138131 0.72 0.39857
Target:  5'- cGUCGCCGGucucGGgCGGCGGuuUCuuGCGc -3'
miRNA:   3'- uCAGCGGCU----UCgGCCGCCu-AGggCGC- -5'
10740 3' -61.8 NC_002794.1 + 137577 0.69 0.566267
Target:  5'- cGcCGCCGggGCCGGagugcgGGGagCCGCc -3'
miRNA:   3'- uCaGCGGCuuCGGCCg-----CCUagGGCGc -5'
10740 3' -61.8 NC_002794.1 + 136981 0.68 0.642827
Target:  5'- cGUCGCgGAAGuaGGCGauguUCuCCGCGg -3'
miRNA:   3'- uCAGCGgCUUCggCCGCcu--AG-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 136740 0.66 0.764487
Target:  5'- cGGUCGagguucgucuccCCG-AGCUGGCGGA-CgCGCGc -3'
miRNA:   3'- -UCAGC------------GGCuUCGGCCGCCUaGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 136381 0.67 0.66202
Target:  5'- aGGUCGuuGAGcaCCGGCuccGGGUCgCGCGu -3'
miRNA:   3'- -UCAGCggCUUc-GGCCG---CCUAGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 135590 0.71 0.474416
Target:  5'- cGUCGCCGggGuCCGucgggucggaaGCGGAUCggUCGCa -3'
miRNA:   3'- uCAGCGGCuuC-GGC-----------CGCCUAG--GGCGc -5'
10740 3' -61.8 NC_002794.1 + 133378 0.66 0.709504
Target:  5'- cGGUCGUCGu--CCGGCGGucaugaucggCCCGgGg -3'
miRNA:   3'- -UCAGCGGCuucGGCCGCCua--------GGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 130051 0.67 0.671588
Target:  5'- cGUCGCCGucaccgGAGCCGGaGGAcUCCUuCGa -3'
miRNA:   3'- uCAGCGGC------UUCGGCCgCCU-AGGGcGC- -5'
10740 3' -61.8 NC_002794.1 + 129747 0.7 0.492244
Target:  5'- -cUCGCCGcguucuGGuacuucggauaCCGGUGGAUCCUGCGa -3'
miRNA:   3'- ucAGCGGCu-----UC-----------GGCCGCCUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 129072 0.66 0.718858
Target:  5'- uGUCGCgGcuGgCGGCGGAccgUCCgGUGg -3'
miRNA:   3'- uCAGCGgCuuCgGCCGCCU---AGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 128925 0.73 0.330948
Target:  5'- uGGUCGCCGAcgacgaacGuCCGGUGGAgCCUGCGc -3'
miRNA:   3'- -UCAGCGGCUu-------C-GGCCGCCUaGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 128259 0.66 0.728145
Target:  5'- uGGUCGCgguCGggGCCGagcGCGGAg-CCGaCGg -3'
miRNA:   3'- -UCAGCG---GCuuCGGC---CGCCUagGGC-GC- -5'
10740 3' -61.8 NC_002794.1 + 126601 0.73 0.345219
Target:  5'- gAG-CGCCGAGGCCGGCGccGAcgUCGCGg -3'
miRNA:   3'- -UCaGCGGCUUCGGCCGC--CUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 126382 0.72 0.414754
Target:  5'- gGG-CGCCGggGCCugcgcGGCGGcgUgCGCGg -3'
miRNA:   3'- -UCaGCGGCuuCGG-----CCGCCuaGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 126252 0.68 0.633216
Target:  5'- uGG-CGCgCGAGGUCGGCGGcuggCUgGCGg -3'
miRNA:   3'- -UCaGCG-GCUUCGGCCGCCua--GGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.