miRNA display CGI


Results 61 - 80 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 124407 0.69 0.585276
Target:  5'- cGGUCGUCGGGgcGCCGuccgccGCGGucucucUCCCGCGc -3'
miRNA:   3'- -UCAGCGGCUU--CGGC------CGCCu-----AGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 123445 0.69 0.538072
Target:  5'- cGUCGCCGAgcGGCUGGCcGAgcaCCUGUa -3'
miRNA:   3'- uCAGCGGCU--UCGGCCGcCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 121386 0.66 0.709504
Target:  5'- cGcCGCCGGgaccgcGGCCGGCGccgggaCCGCGa -3'
miRNA:   3'- uCaGCGGCU------UCGGCCGCcuag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 119506 0.69 0.556822
Target:  5'- gGGUCGUCGGcggcgcggAGCCGGCcgcGGAccccucgUCCGCGg -3'
miRNA:   3'- -UCAGCGGCU--------UCGGCCG---CCUa------GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 118261 0.75 0.272158
Target:  5'- aGGUCgGCCGggG-CGGCGGcgCCgGCGu -3'
miRNA:   3'- -UCAG-CGGCuuCgGCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 118200 0.68 0.622643
Target:  5'- cGUCGCCGccGCCGucgccucGCGGAcggCCaCGCa -3'
miRNA:   3'- uCAGCGGCuuCGGC-------CGCCUa--GG-GCGc -5'
10740 3' -61.8 NC_002794.1 + 117542 0.66 0.728145
Target:  5'- aGGUUGCCGugcagcagcucGAGCCGGuCGuGcagCCCGCc -3'
miRNA:   3'- -UCAGCGGC-----------UUCGGCC-GC-Cua-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 117361 0.66 0.746493
Target:  5'- -cUCGuuGGAG-CGGCGGGccgCCUGCa -3'
miRNA:   3'- ucAGCggCUUCgGCCGCCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 116896 0.68 0.623604
Target:  5'- cGG-CGCCGucuCCGGCGGccgGUCCgGCGu -3'
miRNA:   3'- -UCaGCGGCuucGGCCGCC---UAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 116499 0.66 0.746493
Target:  5'- aAGUCguagauGCCGAGGCaGGCGuagccguccaGGUCCCGgGu -3'
miRNA:   3'- -UCAG------CGGCUUCGgCCGC----------CUAGGGCgC- -5'
10740 3' -61.8 NC_002794.1 + 116072 0.67 0.652431
Target:  5'- gGGUCGCgGAgcgcucGGCgCGGCGGucGUCgCCGgGg -3'
miRNA:   3'- -UCAGCGgCU------UCG-GCCGCC--UAG-GGCgC- -5'
10740 3' -61.8 NC_002794.1 + 115955 0.66 0.752834
Target:  5'- uGUCGCCGGggaccgugggggggAGCgGGaCGGGgagcggCgCCGCGg -3'
miRNA:   3'- uCAGCGGCU--------------UCGgCC-GCCUa-----G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 115808 0.66 0.743762
Target:  5'- cGUCGgCaGAAGCucuuccgccuggauCGGCGGggCCCgGCGg -3'
miRNA:   3'- uCAGCgG-CUUCG--------------GCCGCCuaGGG-CGC- -5'
10740 3' -61.8 NC_002794.1 + 114737 0.7 0.501273
Target:  5'- gGGuUCGUCG-AGCCGGCGccgCCCGCc -3'
miRNA:   3'- -UC-AGCGGCuUCGGCCGCcuaGGGCGc -5'
10740 3' -61.8 NC_002794.1 + 114461 0.66 0.746493
Target:  5'- uGUCGCCGcAGCCG-CaGGAgacCCaCGCGu -3'
miRNA:   3'- uCAGCGGCuUCGGCcG-CCUa--GG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 114199 0.69 0.575754
Target:  5'- cGG-CGCCacGGCCGGCGucUCCgGCGg -3'
miRNA:   3'- -UCaGCGGcuUCGGCCGCcuAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 112335 0.74 0.323977
Target:  5'- gAGcgCGCCG--GCCGGCGGcgCCgGCGg -3'
miRNA:   3'- -UCa-GCGGCuuCGGCCGCCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 112241 0.7 0.519545
Target:  5'- gGGcCGCCGcgaacgccGCCGGCGGGaCCgGCGu -3'
miRNA:   3'- -UCaGCGGCuu------CGGCCGCCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 111768 0.66 0.709504
Target:  5'- cGcCGUCGggGCgGGCucguucgucaGGAgcgCCCGCa -3'
miRNA:   3'- uCaGCGGCuuCGgCCG----------CCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 111634 0.66 0.746493
Target:  5'- ---gGCCGccGCCGGuCGGG-CgCCGCGg -3'
miRNA:   3'- ucagCGGCuuCGGCC-GCCUaG-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.