miRNA display CGI


Results 81 - 100 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 111608 0.66 0.718858
Target:  5'- -aUCuCCcAGGCCGGCGGGgccgCCGCGg -3'
miRNA:   3'- ucAGcGGcUUCGGCCGCCUag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 111121 0.71 0.474416
Target:  5'- cGUCGaCGgcGCCGGCGGccggugcUCCaCGCGg -3'
miRNA:   3'- uCAGCgGCuuCGGCCGCCu------AGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 111085 0.69 0.556822
Target:  5'- cGUCGgCaGGGUCGGCGGG-CCCgGCGg -3'
miRNA:   3'- uCAGCgGcUUCGGCCGCCUaGGG-CGC- -5'
10740 3' -61.8 NC_002794.1 + 110437 0.69 0.538072
Target:  5'- uGUCGUCGucGgUGGCGGAggCCgGCGa -3'
miRNA:   3'- uCAGCGGCuuCgGCCGCCUa-GGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 108379 0.69 0.538072
Target:  5'- gGG-CGCCGGAGCgGggaGCGGAggcUCCgGCGg -3'
miRNA:   3'- -UCaGCGGCUUCGgC---CGCCU---AGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 108152 0.66 0.709504
Target:  5'- cGcCGCCGGGagcGCCGGCGcGAagaCgCCGCGa -3'
miRNA:   3'- uCaGCGGCUU---CGGCCGC-CUa--G-GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 107876 0.66 0.755538
Target:  5'- -aUCGCgGAGGCggcgCGGCGGGUgCgGCu -3'
miRNA:   3'- ucAGCGgCUUCG----GCCGCCUAgGgCGc -5'
10740 3' -61.8 NC_002794.1 + 107524 0.71 0.431335
Target:  5'- --aCGCCGAcGGCCGGCgcGGcgCCgGCGg -3'
miRNA:   3'- ucaGCGGCU-UCGGCCG--CCuaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 107247 0.73 0.359927
Target:  5'- cGUCGCgGAccuGGcCCGGCGGAg-CCGCGc -3'
miRNA:   3'- uCAGCGgCU---UC-GGCCGCCUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 106466 0.71 0.431335
Target:  5'- cGUCGCCGugacUCGGCGcAUCCUGCGg -3'
miRNA:   3'- uCAGCGGCuuc-GGCCGCcUAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 106342 0.67 0.689684
Target:  5'- cGGuUCGCCGGgucgacGGCgGGCGGGcgccgguUCgCGCGg -3'
miRNA:   3'- -UC-AGCGGCU------UCGgCCGCCU-------AGgGCGC- -5'
10740 3' -61.8 NC_002794.1 + 106223 0.71 0.43977
Target:  5'- cGUCGCCGcGGCCGcGCucGGGUCgcagaccgCCGCGa -3'
miRNA:   3'- uCAGCGGCuUCGGC-CG--CCUAG--------GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 105901 0.69 0.556822
Target:  5'- gAGUCGCCGcGG-CGGCGGcgCuaCCGCc -3'
miRNA:   3'- -UCAGCGGCuUCgGCCGCCuaG--GGCGc -5'
10740 3' -61.8 NC_002794.1 + 105758 0.7 0.527852
Target:  5'- cGUCGCCGuucaucgGGGUCGGUGGG--CCGCGu -3'
miRNA:   3'- uCAGCGGC-------UUCGGCCGCCUagGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 104003 0.69 0.566267
Target:  5'- ---aGCCGccGCCGGCGGAacgccUCCGCa -3'
miRNA:   3'- ucagCGGCuuCGGCCGCCUa----GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 102036 0.73 0.367443
Target:  5'- -uUCGCCG-AGCCGGCGu-UCCuCGCGc -3'
miRNA:   3'- ucAGCGGCuUCGGCCGCcuAGG-GCGC- -5'
10740 3' -61.8 NC_002794.1 + 101671 0.66 0.728145
Target:  5'- --cCGuCCGAAacGCCGGCGGAgcgcgagCCCGa- -3'
miRNA:   3'- ucaGC-GGCUU--CGGCCGCCUa------GGGCgc -5'
10740 3' -61.8 NC_002794.1 + 101582 0.71 0.474416
Target:  5'- cGGcCGCCGcGGCCGGgGGGgcgggugccggCCCGCc -3'
miRNA:   3'- -UCaGCGGCuUCGGCCgCCUa----------GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 101482 0.66 0.718858
Target:  5'- --cCGcCCGAAacGCCGGCGGccgGUCCgaGCGg -3'
miRNA:   3'- ucaGC-GGCUU--CGGCCGCC---UAGGg-CGC- -5'
10740 3' -61.8 NC_002794.1 + 100233 0.69 0.566267
Target:  5'- aGGUCuUCGAGGUCGGCGucagCCCGCu -3'
miRNA:   3'- -UCAGcGGCUUCGGCCGCcua-GGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.