miRNA display CGI


Results 101 - 120 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 3' -61.8 NC_002794.1 + 111768 0.66 0.709504
Target:  5'- cGcCGUCGggGCgGGCucguucgucaGGAgcgCCCGCa -3'
miRNA:   3'- uCaGCGGCuuCGgCCG----------CCUa--GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 30083 0.66 0.709504
Target:  5'- cGGUCGaCGAGGCgcgCGGCcGGUCCCGa- -3'
miRNA:   3'- -UCAGCgGCUUCG---GCCGcCUAGGGCgc -5'
10740 3' -61.8 NC_002794.1 + 86905 0.67 0.694422
Target:  5'- gGGcCGCCGAcccggugacgcccguGGCgGGCaggcggggcgGGAUCCgGCGa -3'
miRNA:   3'- -UCaGCGGCU---------------UCGgCCG----------CCUAGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 50904 0.67 0.700094
Target:  5'- --cCGCCGAcuccagcuGCCGGagcuCGGAcucgCCCGCGg -3'
miRNA:   3'- ucaGCGGCUu-------CGGCC----GCCUa---GGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 42485 0.67 0.700094
Target:  5'- --gCGCCGggGCCGaGCGGAgagUGUGa -3'
miRNA:   3'- ucaGCGGCuuCGGC-CGCCUaggGCGC- -5'
10740 3' -61.8 NC_002794.1 + 142942 0.66 0.718858
Target:  5'- aGGUgGCCGAggggaAGUCGGCGGcGUCgaGCu -3'
miRNA:   3'- -UCAgCGGCU-----UCGGCCGCC-UAGggCGc -5'
10740 3' -61.8 NC_002794.1 + 111608 0.66 0.718858
Target:  5'- -aUCuCCcAGGCCGGCGGGgccgCCGCGg -3'
miRNA:   3'- ucAGcGGcUUCGGCCGCCUag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 44296 0.66 0.736442
Target:  5'- --cCGCCG-GGCCGGCgaggcggGGAgcgaCCGCGa -3'
miRNA:   3'- ucaGCGGCuUCGGCCG-------CCUag--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 186622 0.66 0.736442
Target:  5'- aGGUCuccgccaGCCGAcacAGcCCGcGCGGGUCggCCGCGc -3'
miRNA:   3'- -UCAG-------CGGCU---UC-GGC-CGCCUAG--GGCGC- -5'
10740 3' -61.8 NC_002794.1 + 149965 0.66 0.728145
Target:  5'- cGUgGCCGAccuGCC-GCGGA-CCgGCGg -3'
miRNA:   3'- uCAgCGGCUu--CGGcCGCCUaGGgCGC- -5'
10740 3' -61.8 NC_002794.1 + 117542 0.66 0.728145
Target:  5'- aGGUUGCCGugcagcagcucGAGCCGGuCGuGcagCCCGCc -3'
miRNA:   3'- -UCAGCGGC-----------UUCGGCC-GC-Cua-GGGCGc -5'
10740 3' -61.8 NC_002794.1 + 68765 0.66 0.728145
Target:  5'- gGGcCGCCGGGgcGCCGGacgccCGGcUCUCGCGc -3'
miRNA:   3'- -UCaGCGGCUU--CGGCC-----GCCuAGGGCGC- -5'
10740 3' -61.8 NC_002794.1 + 101671 0.66 0.728145
Target:  5'- --cCGuCCGAAacGCCGGCGGAgcgcgagCCCGa- -3'
miRNA:   3'- ucaGC-GGCUU--CGGCCGCCUa------GGGCgc -5'
10740 3' -61.8 NC_002794.1 + 49611 0.66 0.728145
Target:  5'- --aCGgCGGGcGCCGGCGGcgCCuCGCc -3'
miRNA:   3'- ucaGCgGCUU-CGGCCGCCuaGG-GCGc -5'
10740 3' -61.8 NC_002794.1 + 17675 0.66 0.728145
Target:  5'- cGcCGCCGGccCCGGCGGAgaccgagCCGCa -3'
miRNA:   3'- uCaGCGGCUucGGCCGCCUag-----GGCGc -5'
10740 3' -61.8 NC_002794.1 + 10486 0.66 0.728145
Target:  5'- --aCGCCGAagcgcagucuGGCCGGgGGcUCCgaGCGa -3'
miRNA:   3'- ucaGCGGCU----------UCGGCCgCCuAGGg-CGC- -5'
10740 3' -61.8 NC_002794.1 + 128259 0.66 0.728145
Target:  5'- uGGUCGCgguCGggGCCGagcGCGGAg-CCGaCGg -3'
miRNA:   3'- -UCAGCG---GCuuCGGC---CGCCUagGGC-GC- -5'
10740 3' -61.8 NC_002794.1 + 42647 0.66 0.718858
Target:  5'- gAGUCgcgGCCGAAGCCGaCGGcgccgCCgGCa -3'
miRNA:   3'- -UCAG---CGGCUUCGGCcGCCua---GGgCGc -5'
10740 3' -61.8 NC_002794.1 + 60635 0.66 0.718858
Target:  5'- cGGaC-CCGgcGCCGGCGGcgCCgGCc -3'
miRNA:   3'- -UCaGcGGCuuCGGCCGCCuaGGgCGc -5'
10740 3' -61.8 NC_002794.1 + 101482 0.66 0.718858
Target:  5'- --cCGcCCGAAacGCCGGCGGccgGUCCgaGCGg -3'
miRNA:   3'- ucaGC-GGCUU--CGGCCGCC---UAGGg-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.