Results 81 - 100 of 197 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10740 | 3' | -61.8 | NC_002794.1 | + | 60635 | 0.66 | 0.718858 |
Target: 5'- cGGaC-CCGgcGCCGGCGGcgCCgGCc -3' miRNA: 3'- -UCaGcGGCuuCGGCCGCCuaGGgCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 101482 | 0.66 | 0.718858 |
Target: 5'- --cCGcCCGAAacGCCGGCGGccgGUCCgaGCGg -3' miRNA: 3'- ucaGC-GGCUU--CGGCCGCC---UAGGg-CGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 111608 | 0.66 | 0.718858 |
Target: 5'- -aUCuCCcAGGCCGGCGGGgccgCCGCGg -3' miRNA: 3'- ucAGcGGcUUCGGCCGCCUag--GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 142942 | 0.66 | 0.718858 |
Target: 5'- aGGUgGCCGAggggaAGUCGGCGGcGUCgaGCu -3' miRNA: 3'- -UCAgCGGCU-----UCGGCCGCC-UAGggCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 129072 | 0.66 | 0.718858 |
Target: 5'- uGUCGCgGcuGgCGGCGGAccgUCCgGUGg -3' miRNA: 3'- uCAGCGgCuuCgGCCGCCU---AGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 92868 | 0.66 | 0.718858 |
Target: 5'- --aCGCCGccucGGGCCGGCacGUCCUGCu -3' miRNA: 3'- ucaGCGGC----UUCGGCCGccUAGGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 71953 | 0.66 | 0.718858 |
Target: 5'- -cUCGCCGAcguaCCGGCGcaucagccGGUCCCgGCGg -3' miRNA: 3'- ucAGCGGCUuc--GGCCGC--------CUAGGG-CGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 17675 | 0.66 | 0.728145 |
Target: 5'- cGcCGCCGGccCCGGCGGAgaccgagCCGCa -3' miRNA: 3'- uCaGCGGCUucGGCCGCCUag-----GGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 49611 | 0.66 | 0.728145 |
Target: 5'- --aCGgCGGGcGCCGGCGGcgCCuCGCc -3' miRNA: 3'- ucaGCgGCUU-CGGCCGCCuaGG-GCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 101671 | 0.66 | 0.728145 |
Target: 5'- --cCGuCCGAAacGCCGGCGGAgcgcgagCCCGa- -3' miRNA: 3'- ucaGC-GGCUU--CGGCCGCCUa------GGGCgc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 44860 | 0.66 | 0.741023 |
Target: 5'- cGUCGUCG-AGCCGcagacgcugcaacucGCGGAcgaCCUGCGu -3' miRNA: 3'- uCAGCGGCuUCGGC---------------CGCCUa--GGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 44347 | 0.66 | 0.737359 |
Target: 5'- cGG-CGCCGGcgagaccgagAGCgCGGCGGGcgcgacgUCCGCGa -3' miRNA: 3'- -UCaGCGGCU----------UCG-GCCGCCUa------GGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 90225 | 0.66 | 0.737359 |
Target: 5'- --gCGCCGGAGCCccgccuGUGGucCCCGCGc -3' miRNA: 3'- ucaGCGGCUUCGGc-----CGCCuaGGGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 86753 | 0.66 | 0.737359 |
Target: 5'- --aCGagCGAAGCCgGGUGGAUCgCCGgGa -3' miRNA: 3'- ucaGCg-GCUUCGG-CCGCCUAG-GGCgC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 43982 | 0.66 | 0.737359 |
Target: 5'- uGGUCGuuGGAGCCGGacgugugGGAgcaCgGCGc -3' miRNA: 3'- -UCAGCggCUUCGGCCg------CCUag-GgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 44296 | 0.66 | 0.736442 |
Target: 5'- --cCGCCG-GGCCGGCgaggcggGGAgcgaCCGCGa -3' miRNA: 3'- ucaGCGGCuUCGGCCG-------CCUag--GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 186622 | 0.66 | 0.736442 |
Target: 5'- aGGUCuccgccaGCCGAcacAGcCCGcGCGGGUCggCCGCGc -3' miRNA: 3'- -UCAG-------CGGCU---UC-GGC-CGCCUAG--GGCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 149965 | 0.66 | 0.728145 |
Target: 5'- cGUgGCCGAccuGCC-GCGGA-CCgGCGg -3' miRNA: 3'- uCAgCGGCUu--CGGcCGCCUaGGgCGC- -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 117542 | 0.66 | 0.728145 |
Target: 5'- aGGUUGCCGugcagcagcucGAGCCGGuCGuGcagCCCGCc -3' miRNA: 3'- -UCAGCGGC-----------UUCGGCC-GC-Cua-GGGCGc -5' |
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10740 | 3' | -61.8 | NC_002794.1 | + | 68765 | 0.66 | 0.728145 |
Target: 5'- gGGcCGCCGGGgcGCCGGacgccCGGcUCUCGCGc -3' miRNA: 3'- -UCaGCGGCUU--CGGCC-----GCCuAGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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