miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 106393 0.66 0.988432
Target:  5'- gGCGGgcGAACgG-UCGGaCCCcgGCGGCg -3'
miRNA:   3'- gCGCU--CUUGgCaAGCUaGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 53809 0.66 0.988432
Target:  5'- gGCGGGAGCCucggCGGgagCCU-CGGCg -3'
miRNA:   3'- gCGCUCUUGGcaa-GCUag-GGAuGCCG- -5'
10740 5' -53.7 NC_002794.1 + 111107 0.66 0.988432
Target:  5'- gGCGGGAccgugGCCG-UCGAcggCgCCgGCGGCc -3'
miRNA:   3'- gCGCUCU-----UGGCaAGCUa--G-GGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 75042 0.66 0.988432
Target:  5'- aGCc-GAGCCgGUUCGAUUCgCgaccgACGGCg -3'
miRNA:   3'- gCGcuCUUGG-CAAGCUAGG-Ga----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 113560 0.66 0.98829
Target:  5'- gGCGccGGACCGUcugcgucUCGGcgUCCUgcacgACGGCg -3'
miRNA:   3'- gCGCu-CUUGGCA-------AGCU--AGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 140560 0.66 0.987561
Target:  5'- aCGCGAcgaccugcggugucaGAAuCCGUUCG--CCCUGuCGGUg -3'
miRNA:   3'- -GCGCU---------------CUU-GGCAAGCuaGGGAU-GCCG- -5'
10740 5' -53.7 NC_002794.1 + 19474 0.66 0.986954
Target:  5'- gGCGGGAcccGCCGgUCG--CCCgcaccgacgACGGCg -3'
miRNA:   3'- gCGCUCU---UGGCaAGCuaGGGa--------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 30323 0.66 0.986954
Target:  5'- uGCGAGGAUCGUcgccgaagUCGAuggccaccuUCCCgagcgACaGGCc -3'
miRNA:   3'- gCGCUCUUGGCA--------AGCU---------AGGGa----UG-CCG- -5'
10740 5' -53.7 NC_002794.1 + 128488 0.66 0.986954
Target:  5'- uCGCGG--ACCGggggCcGUCCCUuCGGCg -3'
miRNA:   3'- -GCGCUcuUGGCaa--GcUAGGGAuGCCG- -5'
10740 5' -53.7 NC_002794.1 + 129751 0.66 0.986954
Target:  5'- cCGCGuucugguacuucGGAuACCGgUgGAUCCUgcgACGGCg -3'
miRNA:   3'- -GCGC------------UCU-UGGCaAgCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 350 0.66 0.986
Target:  5'- gCGCGAcggcaGAuuuucacggcaaacgGCCGcgCGAUCCC--CGGCa -3'
miRNA:   3'- -GCGCU-----CU---------------UGGCaaGCUAGGGauGCCG- -5'
10740 5' -53.7 NC_002794.1 + 60619 0.66 0.985335
Target:  5'- aGC-AGAACCGgacgggCGGaCCCggcgccgGCGGCg -3'
miRNA:   3'- gCGcUCUUGGCaa----GCUaGGGa------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 178811 0.66 0.985335
Target:  5'- cCGgGGGGACCGggcacUCGGgucUCCC-GCGGg -3'
miRNA:   3'- -GCgCUCUUGGCa----AGCU---AGGGaUGCCg -5'
10740 5' -53.7 NC_002794.1 + 154318 0.66 0.985335
Target:  5'- uCGgGAGAGCgGcgUCGGucgUCCCgggugccGCGGCc -3'
miRNA:   3'- -GCgCUCUUGgCa-AGCU---AGGGa------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 80882 0.66 0.985335
Target:  5'- gCGCGu--GCCc--CGAUCCCccgGCGGCc -3'
miRNA:   3'- -GCGCucuUGGcaaGCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 124517 0.66 0.985335
Target:  5'- cCGCGAGAcaaggaGCCGc-CGAcgcuggCgCUGCGGCu -3'
miRNA:   3'- -GCGCUCU------UGGCaaGCUa-----GgGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 96400 0.66 0.985165
Target:  5'- uCGCGccuuACCGgcgcuucUUCGAUCUCggcGCGGCg -3'
miRNA:   3'- -GCGCucu-UGGC-------AAGCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 121927 0.66 0.984646
Target:  5'- cCGCGGGGgaagaggccgacgcGCUGaUCGAgcgccuggagcgcUCCgUGCGGCu -3'
miRNA:   3'- -GCGCUCU--------------UGGCaAGCU-------------AGGgAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 107310 0.66 0.984292
Target:  5'- uCGCGGGGgcGCCGUccgcgcgguucggcuUCGGUCCgUGggucCGGUc -3'
miRNA:   3'- -GCGCUCU--UGGCA---------------AGCUAGGgAU----GCCG- -5'
10740 5' -53.7 NC_002794.1 + 10641 0.66 0.983566
Target:  5'- gGCGGGGAgCGgcgCGAgCCCgACGaGCg -3'
miRNA:   3'- gCGCUCUUgGCaa-GCUaGGGaUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.