Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 140560 | 0.66 | 0.987561 |
Target: 5'- aCGCGAcgaccugcggugucaGAAuCCGUUCG--CCCUGuCGGUg -3' miRNA: 3'- -GCGCU---------------CUU-GGCAAGCuaGGGAU-GCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 129751 | 0.66 | 0.986954 |
Target: 5'- cCGCGuucugguacuucGGAuACCGgUgGAUCCUgcgACGGCg -3' miRNA: 3'- -GCGC------------UCU-UGGCaAgCUAGGGa--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 128488 | 0.66 | 0.986954 |
Target: 5'- uCGCGG--ACCGggggCcGUCCCUuCGGCg -3' miRNA: 3'- -GCGCUcuUGGCaa--GcUAGGGAuGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 80882 | 0.66 | 0.985335 |
Target: 5'- gCGCGu--GCCc--CGAUCCCccgGCGGCc -3' miRNA: 3'- -GCGCucuUGGcaaGCUAGGGa--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 350 | 0.66 | 0.986 |
Target: 5'- gCGCGAcggcaGAuuuucacggcaaacgGCCGcgCGAUCCC--CGGCa -3' miRNA: 3'- -GCGCU-----CU---------------UGGCaaGCUAGGGauGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 124517 | 0.66 | 0.985335 |
Target: 5'- cCGCGAGAcaaggaGCCGc-CGAcgcuggCgCUGCGGCu -3' miRNA: 3'- -GCGCUCU------UGGCaaGCUa-----GgGAUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 19474 | 0.66 | 0.986954 |
Target: 5'- gGCGGGAcccGCCGgUCG--CCCgcaccgacgACGGCg -3' miRNA: 3'- gCGCUCU---UGGCaAGCuaGGGa--------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 30323 | 0.66 | 0.986954 |
Target: 5'- uGCGAGGAUCGUcgccgaagUCGAuggccaccuUCCCgagcgACaGGCc -3' miRNA: 3'- gCGCUCUUGGCA--------AGCU---------AGGGa----UG-CCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 60688 | 0.67 | 0.969407 |
Target: 5'- uCGaCGGGAGCCGcgCGca-CUUugGGCa -3' miRNA: 3'- -GC-GCUCUUGGCaaGCuagGGAugCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 40446 | 0.67 | 0.969115 |
Target: 5'- aGUGGGAGcgaugccCCGggCGcuGUCCCUucggGCGGCu -3' miRNA: 3'- gCGCUCUU-------GGCaaGC--UAGGGA----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 94023 | 0.67 | 0.966392 |
Target: 5'- gGCGGGuuccGCCGg-CGggCCCgagaGCGGCg -3' miRNA: 3'- gCGCUCu---UGGCaaGCuaGGGa---UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 127515 | 0.67 | 0.974851 |
Target: 5'- aGCuGGGGCUGUgccgccgCGAUCCUgcUGGCg -3' miRNA: 3'- gCGcUCUUGGCAa------GCUAGGGauGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 13103 | 0.67 | 0.974851 |
Target: 5'- gGaCGAGGugCGUUCGGcggggUCgCCgcGCGGCu -3' miRNA: 3'- gC-GCUCUugGCAAGCU-----AG-GGa-UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 100586 | 0.67 | 0.969407 |
Target: 5'- aCGCucGGGCCGUgcgcgcCGAUCCCgGgGGUg -3' miRNA: 3'- -GCGcuCUUGGCAa-----GCUAGGGaUgCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 106264 | 0.67 | 0.974851 |
Target: 5'- gGCGAGcGCCGcgcgUCGcgCCgCcucggACGGCg -3' miRNA: 3'- gCGCUCuUGGCa---AGCuaGG-Ga----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 186647 | 0.67 | 0.974851 |
Target: 5'- gCGCGGGucgGCCGcgCGcacCCCguacACGGCg -3' miRNA: 3'- -GCGCUCu--UGGCaaGCua-GGGa---UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 95566 | 0.67 | 0.977291 |
Target: 5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3' miRNA: 3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 70311 | 0.67 | 0.979113 |
Target: 5'- gCGCGaAGAGCCGcUUCG--CCCgcgaagacgccgACGGCc -3' miRNA: 3'- -GCGC-UCUUGGC-AAGCuaGGGa-----------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 157634 | 0.67 | 0.979552 |
Target: 5'- uGCGAGcuguacaucACCGagcaCGAUCCCgacgcgcugGCGGCu -3' miRNA: 3'- gCGCUCu--------UGGCaa--GCUAGGGa--------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 76241 | 0.68 | 0.963172 |
Target: 5'- cCGCcGGGACCcaccuccgUCGAgacgCUCUACGGCc -3' miRNA: 3'- -GCGcUCUUGGca------AGCUa---GGGAUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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