miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 13957 0.68 0.956101
Target:  5'- uGCGugucGAGCCGcUCGGagacguUCgCUGCGGCc -3'
miRNA:   3'- gCGCu---CUUGGCaAGCU------AGgGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 119518 0.68 0.956101
Target:  5'- gCGCG-GAGCCGgccgCGGacCCCUcguccGCGGCc -3'
miRNA:   3'- -GCGCuCUUGGCaa--GCUa-GGGA-----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 178068 0.68 0.956101
Target:  5'- aGCGAGGgauCCGggugUCGAgaguacacgaUCCCggUACGGUg -3'
miRNA:   3'- gCGCUCUu--GGCa---AGCU----------AGGG--AUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 137594 0.68 0.948159
Target:  5'- uGCgGGGAGCCGccgccggCGGUCgCgGCGGCg -3'
miRNA:   3'- gCG-CUCUUGGCaa-----GCUAGgGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 91258 0.68 0.948159
Target:  5'- uCGCGGacGCCGUUCGuggaCCggcGCGGCc -3'
miRNA:   3'- -GCGCUcuUGGCAAGCuag-GGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95144 0.68 0.956101
Target:  5'- uGCGcGGGCUGUugugCGAUCaCCUgACGGUg -3'
miRNA:   3'- gCGCuCUUGGCAa---GCUAG-GGA-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 89590 0.68 0.956101
Target:  5'- gGCcgucGAGCCGcgCGAUCCCggguCGGUu -3'
miRNA:   3'- gCGcu--CUUGGCaaGCUAGGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 179659 0.68 0.963172
Target:  5'- gGCGGGcucGCCGgaCGGcaCCCgcgGCGGCg -3'
miRNA:   3'- gCGCUCu--UGGCaaGCUa-GGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 76241 0.68 0.963172
Target:  5'- cCGCcGGGACCcaccuccgUCGAgacgCUCUACGGCc -3'
miRNA:   3'- -GCGcUCUUGGca------AGCUa---GGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 180732 0.68 0.963172
Target:  5'- aCGCGcGGAcgacGCCGUcCGGcUCCUcgGCGGCu -3'
miRNA:   3'- -GCGC-UCU----UGGCAaGCU-AGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 117191 0.68 0.959743
Target:  5'- uCGCGcaGAUCGgcgUCGggCCCggGCGGCu -3'
miRNA:   3'- -GCGCucUUGGCa--AGCuaGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 36359 0.68 0.959743
Target:  5'- gCGCGGccACCGggugCGcgCCC-GCGGCg -3'
miRNA:   3'- -GCGCUcuUGGCaa--GCuaGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 185407 0.68 0.959743
Target:  5'- gCGCGGGcccGACCGccgUCGA-CUCgacGCGGCg -3'
miRNA:   3'- -GCGCUC---UUGGCa--AGCUaGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 70311 0.67 0.979113
Target:  5'- gCGCGaAGAGCCGcUUCG--CCCgcgaagacgccgACGGCc -3'
miRNA:   3'- -GCGC-UCUUGGC-AAGCuaGGGa-----------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 13103 0.67 0.974851
Target:  5'- gGaCGAGGugCGUUCGGcggggUCgCCgcGCGGCu -3'
miRNA:   3'- gC-GCUCUugGCAAGCU-----AG-GGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 127515 0.67 0.974851
Target:  5'- aGCuGGGGCUGUgccgccgCGAUCCUgcUGGCg -3'
miRNA:   3'- gCGcUCUUGGCAa------GCUAGGGauGCCG- -5'
10740 5' -53.7 NC_002794.1 + 94023 0.67 0.966392
Target:  5'- gGCGGGuuccGCCGg-CGggCCCgagaGCGGCg -3'
miRNA:   3'- gCGCUCu---UGGCaaGCuaGGGa---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 40446 0.67 0.969115
Target:  5'- aGUGGGAGcgaugccCCGggCGcuGUCCCUucggGCGGCu -3'
miRNA:   3'- gCGCUCUU-------GGCaaGC--UAGGGA----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 60688 0.67 0.969407
Target:  5'- uCGaCGGGAGCCGcgCGca-CUUugGGCa -3'
miRNA:   3'- -GC-GCUCUUGGCaaGCuagGGAugCCG- -5'
10740 5' -53.7 NC_002794.1 + 95566 0.67 0.977291
Target:  5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3'
miRNA:   3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.