miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 94023 0.67 0.966392
Target:  5'- gGCGGGuuccGCCGg-CGggCCCgagaGCGGCg -3'
miRNA:   3'- gCGCUCu---UGGCaaGCuaGGGa---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 40446 0.67 0.969115
Target:  5'- aGUGGGAGcgaugccCCGggCGcuGUCCCUucggGCGGCu -3'
miRNA:   3'- gCGCUCUU-------GGCaaGC--UAGGGA----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 60688 0.67 0.969407
Target:  5'- uCGaCGGGAGCCGcgCGca-CUUugGGCa -3'
miRNA:   3'- -GC-GCUCUUGGCaaGCuagGGAugCCG- -5'
10740 5' -53.7 NC_002794.1 + 95566 0.67 0.977291
Target:  5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3'
miRNA:   3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 48977 0.66 0.983566
Target:  5'- cCGCGgccaagccuccaGGccCCGUUCGAagcucUCCCgcgccGCGGCg -3'
miRNA:   3'- -GCGC------------UCuuGGCAAGCU-----AGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 178811 0.66 0.985335
Target:  5'- cCGgGGGGACCGggcacUCGGgucUCCC-GCGGg -3'
miRNA:   3'- -GCgCUCUUGGCa----AGCU---AGGGaUGCCg -5'
10740 5' -53.7 NC_002794.1 + 154318 0.66 0.985335
Target:  5'- uCGgGAGAGCgGcgUCGGucgUCCCgggugccGCGGCc -3'
miRNA:   3'- -GCgCUCUUGgCa-AGCU---AGGGa------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 80882 0.66 0.985335
Target:  5'- gCGCGu--GCCc--CGAUCCCccgGCGGCc -3'
miRNA:   3'- -GCGCucuUGGcaaGCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 350 0.66 0.986
Target:  5'- gCGCGAcggcaGAuuuucacggcaaacgGCCGcgCGAUCCC--CGGCa -3'
miRNA:   3'- -GCGCU-----CU---------------UGGCaaGCUAGGGauGCCG- -5'
10740 5' -53.7 NC_002794.1 + 129751 0.66 0.986954
Target:  5'- cCGCGuucugguacuucGGAuACCGgUgGAUCCUgcgACGGCg -3'
miRNA:   3'- -GCGC------------UCU-UGGCaAgCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 140560 0.66 0.987561
Target:  5'- aCGCGAcgaccugcggugucaGAAuCCGUUCG--CCCUGuCGGUg -3'
miRNA:   3'- -GCGCU---------------CUU-GGCAAGCuaGGGAU-GCCG- -5'
10740 5' -53.7 NC_002794.1 + 10641 0.66 0.983566
Target:  5'- gGCGGGGAgCGgcgCGAgCCCgACGaGCg -3'
miRNA:   3'- gCGCUCUUgGCaa-GCUaGGGaUGC-CG- -5'
10740 5' -53.7 NC_002794.1 + 14454 0.66 0.983006
Target:  5'- cCGCGGGcGACCGUgUCGAgcggcgcgccgcgcUCgCUguucGCGGCg -3'
miRNA:   3'- -GCGCUC-UUGGCA-AGCU--------------AGgGA----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 124517 0.66 0.985335
Target:  5'- cCGCGAGAcaaggaGCCGc-CGAcgcuggCgCUGCGGCu -3'
miRNA:   3'- -GCGCUCU------UGGCaaGCUa-----GgGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 34553 0.66 0.981641
Target:  5'- cCGCGugcuGAccCCGUuccucgugUCGAU-CCUGCGGCu -3'
miRNA:   3'- -GCGCu---CUu-GGCA--------AGCUAgGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 143805 0.66 0.981641
Target:  5'- uCGCGuacacGCCG-UCGGUUCCcAUGGCg -3'
miRNA:   3'- -GCGCucu--UGGCaAGCUAGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 128278 0.66 0.981641
Target:  5'- gCGCG-GAGCCGacggccgucUUCGAcaCCgagACGGCg -3'
miRNA:   3'- -GCGCuCUUGGC---------AAGCUagGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 40121 0.66 0.981641
Target:  5'- gCGCGAGAGCgGagagccaCGggCUCUccGCGGCu -3'
miRNA:   3'- -GCGCUCUUGgCaa-----GCuaGGGA--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 87301 0.66 0.981641
Target:  5'- aGCGGGccuacCCGguagCGGUCCCcagguccaGCGGCg -3'
miRNA:   3'- gCGCUCuu---GGCaa--GCUAGGGa-------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 141676 0.66 0.981641
Target:  5'- aGCGaAGAcgggucGCCGUacgCGGUCCCgucgUGGCc -3'
miRNA:   3'- gCGC-UCU------UGGCAa--GCUAGGGau--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.