miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 141178 1.13 0.004417
Target:  5'- uCGCGAGAACCGUUCGAUCCCUACGGCg -3'
miRNA:   3'- -GCGCUCUUGGCAAGCUAGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 133728 0.78 0.539522
Target:  5'- uGCGGGAagaucugcuGCCGUUCGGUCgCCUGCaGGg -3'
miRNA:   3'- gCGCUCU---------UGGCAAGCUAG-GGAUG-CCg -5'
10740 5' -53.7 NC_002794.1 + 86943 0.77 0.578984
Target:  5'- gGCGGGAuCCGgcgagcgUCGAcgUCCgCUGCGGCg -3'
miRNA:   3'- gCGCUCUuGGCa------AGCU--AGG-GAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 152582 0.76 0.619027
Target:  5'- cCGCGGcGGCCGccaCG-UCCCUGCGGCg -3'
miRNA:   3'- -GCGCUcUUGGCaa-GCuAGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 84762 0.76 0.639135
Target:  5'- cCGCGAGAggGCCGUcCGAggCCCggccCGGCu -3'
miRNA:   3'- -GCGCUCU--UGGCAaGCUa-GGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 57702 0.75 0.699074
Target:  5'- gGCGAGAAgaaCGUggcgcUCGAgcaCCUGCGGCg -3'
miRNA:   3'- gCGCUCUUg--GCA-----AGCUag-GGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 63996 0.74 0.708923
Target:  5'- aGCGGGcuCCGUcUGggUCCUGCGGCu -3'
miRNA:   3'- gCGCUCuuGGCAaGCuaGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 108195 0.74 0.722604
Target:  5'- uGCGAGcGgcgcugcgccgccgcGCCGgccUCGcgCCCUGCGGCa -3'
miRNA:   3'- gCGCUC-U---------------UGGCa--AGCuaGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 89248 0.73 0.75705
Target:  5'- gGCGGGuACCGUcgcuggccgUCGAUCUCgACGGUg -3'
miRNA:   3'- gCGCUCuUGGCA---------AGCUAGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 149697 0.72 0.808609
Target:  5'- cCGCGGGGGCCGccuggCGGgugggccgccugccUCgCUACGGCg -3'
miRNA:   3'- -GCGCUCUUGGCaa---GCU--------------AGgGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 92947 0.72 0.811197
Target:  5'- cCGCGucaAGAACCGgcCcAUCCCgcgcgGCGGCa -3'
miRNA:   3'- -GCGC---UCUUGGCaaGcUAGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 8833 0.72 0.81972
Target:  5'- aCGUGAGGACCaucaUGAUCCagGCGGCg -3'
miRNA:   3'- -GCGCUCUUGGcaa-GCUAGGgaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 145940 0.71 0.865684
Target:  5'- gGCGAGAGCgGUUCGGgagucgcgagcgCCCaGCGcGCc -3'
miRNA:   3'- gCGCUCUUGgCAAGCUa-----------GGGaUGC-CG- -5'
10740 5' -53.7 NC_002794.1 + 185488 0.71 0.874381
Target:  5'- gGCGAGGggACCGccuauauaUUCGAUCuCCgcguCGGCg -3'
miRNA:   3'- gCGCUCU--UGGC--------AAGCUAG-GGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 55334 0.71 0.874381
Target:  5'- -cCGAGGAcCCGgggUCGcgCCCgagGCGGCc -3'
miRNA:   3'- gcGCUCUU-GGCa--AGCuaGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 44532 0.71 0.881398
Target:  5'- cCGCGAGcgcGCCGUcgUCG-UCgCCgGCGGCg -3'
miRNA:   3'- -GCGCUCu--UGGCA--AGCuAG-GGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 129302 0.7 0.894787
Target:  5'- cCGCGAGGAUagcaucgcggUGUuuUCGAcgCCCgggGCGGCg -3'
miRNA:   3'- -GCGCUCUUG----------GCA--AGCUa-GGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 183090 0.7 0.894787
Target:  5'- aGCGAGGucgucaCGUUCcgGAUCCCgcacguguucgGCGGCg -3'
miRNA:   3'- gCGCUCUug----GCAAG--CUAGGGa----------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 159810 0.7 0.913204
Target:  5'- uCGCGAauGAgagcgACCGagugUUGGUCCCagACGGCg -3'
miRNA:   3'- -GCGCU--CU-----UGGCa---AGCUAGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 110619 0.7 0.918888
Target:  5'- aGCGGGAGCCG--CGG-CgCCgcgGCGGCg -3'
miRNA:   3'- gCGCUCUUGGCaaGCUaG-GGa--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.