Results 21 - 40 of 92 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 90681 | 0.69 | 0.924341 |
Target: 5'- cCGCGuG-GCUGUUCGugugCCC-GCGGCa -3' miRNA: 3'- -GCGCuCuUGGCAAGCua--GGGaUGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 17013 | 0.69 | 0.929565 |
Target: 5'- gGCGAGAAcacCCGgcggCGGUCCC-AUGGa -3' miRNA: 3'- gCGCUCUU---GGCaa--GCUAGGGaUGCCg -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 128071 | 0.69 | 0.929565 |
Target: 5'- cCGUGAGGGCCGaaUGG-CCCgaguCGGCg -3' miRNA: 3'- -GCGCUCUUGGCaaGCUaGGGau--GCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 99549 | 0.69 | 0.929565 |
Target: 5'- cCGCGGaAACCGcgCGcgCCCUccGCGGg -3' miRNA: 3'- -GCGCUcUUGGCaaGCuaGGGA--UGCCg -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 94404 | 0.69 | 0.931589 |
Target: 5'- uGCGGGGACCGcgguguggggCGcgCCCgacaaccuggaggccUACGGCg -3' miRNA: 3'- gCGCUCUUGGCaa--------GCuaGGG---------------AUGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 129167 | 0.69 | 0.934557 |
Target: 5'- uCGCGGccGAugGCCGUUCGAUCggCCUcCGGg -3' miRNA: 3'- -GCGCU--CU--UGGCAAGCUAG--GGAuGCCg -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 96190 | 0.69 | 0.934557 |
Target: 5'- gGCGccuGCCGgcCGAgUCCCUGcCGGCg -3' miRNA: 3'- gCGCucuUGGCaaGCU-AGGGAU-GCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 95861 | 0.69 | 0.934557 |
Target: 5'- gGCGGGcgGGCCGUUucaguguggCGA-CCCgGCGGCg -3' miRNA: 3'- gCGCUC--UUGGCAA---------GCUaGGGaUGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 176520 | 0.69 | 0.939319 |
Target: 5'- aGCGuucGAGCgUGUcgcaUCGGUCCCUuugggcgacGCGGCg -3' miRNA: 3'- gCGCu--CUUG-GCA----AGCUAGGGA---------UGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 189529 | 0.69 | 0.939319 |
Target: 5'- aGCGGGuGCCGcucccagUCGAUCCaccacAUGGCg -3' miRNA: 3'- gCGCUCuUGGCa------AGCUAGGga---UGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 189784 | 0.69 | 0.939319 |
Target: 5'- cCGCGGGAugCGgaaaucgccgUCGAaCCCcgGCGGg -3' miRNA: 3'- -GCGCUCUugGCa---------AGCUaGGGa-UGCCg -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 189016 | 0.69 | 0.939319 |
Target: 5'- uCGCGAcaggccagGAGCCGcUCGAcCgCCaGCGGCg -3' miRNA: 3'- -GCGCU--------CUUGGCaAGCUaG-GGaUGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 142041 | 0.69 | 0.939319 |
Target: 5'- uCGCG-GGACCGUaccggCGGUUCCggUGCGGg -3' miRNA: 3'- -GCGCuCUUGGCAa----GCUAGGG--AUGCCg -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 136470 | 0.69 | 0.943852 |
Target: 5'- gGCGAGGuucGCCGcguacaggUCGAUgCCUucGCGGUu -3' miRNA: 3'- gCGCUCU---UGGCa-------AGCUAgGGA--UGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 145092 | 0.69 | 0.943852 |
Target: 5'- gGUGuuGAACCGgaCGGUCCuCUacGCGGUg -3' miRNA: 3'- gCGCu-CUUGGCaaGCUAGG-GA--UGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 746 | 0.69 | 0.943852 |
Target: 5'- uCGCGGGGcucuGCCGUUuugcCGggCCC-GCGGUg -3' miRNA: 3'- -GCGCUCU----UGGCAA----GCuaGGGaUGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 161571 | 0.69 | 0.943852 |
Target: 5'- uCGCGgcGGAGCCG-UCGGUCUcgucugauucgaCUGCGGg -3' miRNA: 3'- -GCGC--UCUUGGCaAGCUAGG------------GAUGCCg -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 160356 | 0.69 | 0.943852 |
Target: 5'- cCGCGGcGAGCg---UGAUgCCUACGGCg -3' miRNA: 3'- -GCGCU-CUUGgcaaGCUAgGGAUGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 130525 | 0.69 | 0.943852 |
Target: 5'- aGCGGGcuGACCGUgaCGAuUUCCgacGCGGCg -3' miRNA: 3'- gCGCUC--UUGGCAa-GCU-AGGGa--UGCCG- -5' |
|||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 91258 | 0.68 | 0.948159 |
Target: 5'- uCGCGGacGCCGUUCGuggaCCggcGCGGCc -3' miRNA: 3'- -GCGCUcuUGGCAAGCuag-GGa--UGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home