miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 106264 0.67 0.974851
Target:  5'- gGCGAGcGCCGcgcgUCGcgCCgCcucggACGGCg -3'
miRNA:   3'- gCGCUCuUGGCa---AGCuaGG-Ga----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95566 0.67 0.977291
Target:  5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3'
miRNA:   3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 70311 0.67 0.979113
Target:  5'- gCGCGaAGAGCCGcUUCG--CCCgcgaagacgccgACGGCc -3'
miRNA:   3'- -GCGC-UCUUGGC-AAGCuaGGGa-----------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 157634 0.67 0.979552
Target:  5'- uGCGAGcuguacaucACCGagcaCGAUCCCgacgcgcugGCGGCu -3'
miRNA:   3'- gCGCUCu--------UGGCaa--GCUAGGGa--------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 34553 0.66 0.981641
Target:  5'- cCGCGugcuGAccCCGUuccucgugUCGAU-CCUGCGGCu -3'
miRNA:   3'- -GCGCu---CUu-GGCA--------AGCUAgGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 143805 0.66 0.981641
Target:  5'- uCGCGuacacGCCG-UCGGUUCCcAUGGCg -3'
miRNA:   3'- -GCGCucu--UGGCaAGCUAGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 128278 0.66 0.981641
Target:  5'- gCGCG-GAGCCGacggccgucUUCGAcaCCgagACGGCg -3'
miRNA:   3'- -GCGCuCUUGGC---------AAGCUagGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 40121 0.66 0.981641
Target:  5'- gCGCGAGAGCgGagagccaCGggCUCUccGCGGCu -3'
miRNA:   3'- -GCGCUCUUGgCaa-----GCuaGGGA--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 87301 0.66 0.981641
Target:  5'- aGCGGGccuacCCGguagCGGUCCCcagguccaGCGGCg -3'
miRNA:   3'- gCGCUCuu---GGCaa--GCUAGGGa-------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 141676 0.66 0.981641
Target:  5'- aGCGaAGAcgggucGCCGUacgCGGUCCCgucgUGGCc -3'
miRNA:   3'- gCGC-UCU------UGGCAa--GCUAGGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 14454 0.66 0.983006
Target:  5'- cCGCGGGcGACCGUgUCGAgcggcgcgccgcgcUCgCUguucGCGGCg -3'
miRNA:   3'- -GCGCUC-UUGGCA-AGCU--------------AGgGA----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 10641 0.66 0.983566
Target:  5'- gGCGGGGAgCGgcgCGAgCCCgACGaGCg -3'
miRNA:   3'- gCGCUCUUgGCaa-GCUaGGGaUGC-CG- -5'
10740 5' -53.7 NC_002794.1 + 48977 0.66 0.983566
Target:  5'- cCGCGgccaagccuccaGGccCCGUUCGAagcucUCCCgcgccGCGGCg -3'
miRNA:   3'- -GCGC------------UCuuGGCAAGCU-----AGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 107310 0.66 0.984292
Target:  5'- uCGCGGGGgcGCCGUccgcgcgguucggcuUCGGUCCgUGggucCGGUc -3'
miRNA:   3'- -GCGCUCU--UGGCA---------------AGCUAGGgAU----GCCG- -5'
10740 5' -53.7 NC_002794.1 + 121927 0.66 0.984646
Target:  5'- cCGCGGGGgaagaggccgacgcGCUGaUCGAgcgccuggagcgcUCCgUGCGGCu -3'
miRNA:   3'- -GCGCUCU--------------UGGCaAGCU-------------AGGgAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 96400 0.66 0.985165
Target:  5'- uCGCGccuuACCGgcgcuucUUCGAUCUCggcGCGGCg -3'
miRNA:   3'- -GCGCucu-UGGC-------AAGCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 124517 0.66 0.985335
Target:  5'- cCGCGAGAcaaggaGCCGc-CGAcgcuggCgCUGCGGCu -3'
miRNA:   3'- -GCGCUCU------UGGCaaGCUa-----GgGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 60619 0.66 0.985335
Target:  5'- aGC-AGAACCGgacgggCGGaCCCggcgccgGCGGCg -3'
miRNA:   3'- gCGcUCUUGGCaa----GCUaGGGa------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 178811 0.66 0.985335
Target:  5'- cCGgGGGGACCGggcacUCGGgucUCCC-GCGGg -3'
miRNA:   3'- -GCgCUCUUGGCa----AGCU---AGGGaUGCCg -5'
10740 5' -53.7 NC_002794.1 + 154318 0.66 0.985335
Target:  5'- uCGgGAGAGCgGcgUCGGucgUCCCgggugccGCGGCc -3'
miRNA:   3'- -GCgCUCUUGgCa-AGCU---AGGGa------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.