miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 48977 0.66 0.983566
Target:  5'- cCGCGgccaagccuccaGGccCCGUUCGAagcucUCCCgcgccGCGGCg -3'
miRNA:   3'- -GCGC------------UCuuGGCAAGCU-----AGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 14454 0.66 0.983006
Target:  5'- cCGCGGGcGACCGUgUCGAgcggcgcgccgcgcUCgCUguucGCGGCg -3'
miRNA:   3'- -GCGCUC-UUGGCA-AGCU--------------AGgGA----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 141676 0.66 0.981641
Target:  5'- aGCGaAGAcgggucGCCGUacgCGGUCCCgucgUGGCc -3'
miRNA:   3'- gCGC-UCU------UGGCAa--GCUAGGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 87301 0.66 0.981641
Target:  5'- aGCGGGccuacCCGguagCGGUCCCcagguccaGCGGCg -3'
miRNA:   3'- gCGCUCuu---GGCaa--GCUAGGGa-------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 40121 0.66 0.981641
Target:  5'- gCGCGAGAGCgGagagccaCGggCUCUccGCGGCu -3'
miRNA:   3'- -GCGCUCUUGgCaa-----GCuaGGGA--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 128278 0.66 0.981641
Target:  5'- gCGCG-GAGCCGacggccgucUUCGAcaCCgagACGGCg -3'
miRNA:   3'- -GCGCuCUUGGC---------AAGCUagGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 143805 0.66 0.981641
Target:  5'- uCGCGuacacGCCG-UCGGUUCCcAUGGCg -3'
miRNA:   3'- -GCGCucu--UGGCaAGCUAGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 34553 0.66 0.981641
Target:  5'- cCGCGugcuGAccCCGUuccucgugUCGAU-CCUGCGGCu -3'
miRNA:   3'- -GCGCu---CUu-GGCA--------AGCUAgGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 157634 0.67 0.979552
Target:  5'- uGCGAGcuguacaucACCGagcaCGAUCCCgacgcgcugGCGGCu -3'
miRNA:   3'- gCGCUCu--------UGGCaa--GCUAGGGa--------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 70311 0.67 0.979113
Target:  5'- gCGCGaAGAGCCGcUUCG--CCCgcgaagacgccgACGGCc -3'
miRNA:   3'- -GCGC-UCUUGGC-AAGCuaGGGa-----------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95566 0.67 0.977291
Target:  5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3'
miRNA:   3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 186647 0.67 0.974851
Target:  5'- gCGCGGGucgGCCGcgCGcacCCCguacACGGCg -3'
miRNA:   3'- -GCGCUCu--UGGCaaGCua-GGGa---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 106264 0.67 0.974851
Target:  5'- gGCGAGcGCCGcgcgUCGcgCCgCcucggACGGCg -3'
miRNA:   3'- gCGCUCuUGGCa---AGCuaGG-Ga----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 13103 0.67 0.974851
Target:  5'- gGaCGAGGugCGUUCGGcggggUCgCCgcGCGGCu -3'
miRNA:   3'- gC-GCUCUugGCAAGCU-----AG-GGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 127515 0.67 0.974851
Target:  5'- aGCuGGGGCUGUgccgccgCGAUCCUgcUGGCg -3'
miRNA:   3'- gCGcUCUUGGCAa------GCUAGGGauGCCG- -5'
10740 5' -53.7 NC_002794.1 + 100586 0.67 0.969407
Target:  5'- aCGCucGGGCCGUgcgcgcCGAUCCCgGgGGUg -3'
miRNA:   3'- -GCGcuCUUGGCAa-----GCUAGGGaUgCCG- -5'
10740 5' -53.7 NC_002794.1 + 60688 0.67 0.969407
Target:  5'- uCGaCGGGAGCCGcgCGca-CUUugGGCa -3'
miRNA:   3'- -GC-GCUCUUGGCaaGCuagGGAugCCG- -5'
10740 5' -53.7 NC_002794.1 + 40446 0.67 0.969115
Target:  5'- aGUGGGAGcgaugccCCGggCGcuGUCCCUucggGCGGCu -3'
miRNA:   3'- gCGCUCUU-------GGCaaGC--UAGGGA----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 94023 0.67 0.966392
Target:  5'- gGCGGGuuccGCCGg-CGggCCCgagaGCGGCg -3'
miRNA:   3'- gCGCUCu---UGGCaaGCuaGGGa---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 76241 0.68 0.963172
Target:  5'- cCGCcGGGACCcaccuccgUCGAgacgCUCUACGGCc -3'
miRNA:   3'- -GCGcUCUUGGca------AGCUa---GGGAUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.