miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 142041 0.69 0.939319
Target:  5'- uCGCG-GGACCGUaccggCGGUUCCggUGCGGg -3'
miRNA:   3'- -GCGCuCUUGGCAa----GCUAGGG--AUGCCg -5'
10740 5' -53.7 NC_002794.1 + 176520 0.69 0.939319
Target:  5'- aGCGuucGAGCgUGUcgcaUCGGUCCCUuugggcgacGCGGCg -3'
miRNA:   3'- gCGCu--CUUG-GCA----AGCUAGGGA---------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 189784 0.69 0.939319
Target:  5'- cCGCGGGAugCGgaaaucgccgUCGAaCCCcgGCGGg -3'
miRNA:   3'- -GCGCUCUugGCa---------AGCUaGGGa-UGCCg -5'
10740 5' -53.7 NC_002794.1 + 189016 0.69 0.939319
Target:  5'- uCGCGAcaggccagGAGCCGcUCGAcCgCCaGCGGCg -3'
miRNA:   3'- -GCGCU--------CUUGGCaAGCUaG-GGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95861 0.69 0.934557
Target:  5'- gGCGGGcgGGCCGUUucaguguggCGA-CCCgGCGGCg -3'
miRNA:   3'- gCGCUC--UUGGCAA---------GCUaGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 96190 0.69 0.934557
Target:  5'- gGCGccuGCCGgcCGAgUCCCUGcCGGCg -3'
miRNA:   3'- gCGCucuUGGCaaGCU-AGGGAU-GCCG- -5'
10740 5' -53.7 NC_002794.1 + 129167 0.69 0.934557
Target:  5'- uCGCGGccGAugGCCGUUCGAUCggCCUcCGGg -3'
miRNA:   3'- -GCGCU--CU--UGGCAAGCUAG--GGAuGCCg -5'
10740 5' -53.7 NC_002794.1 + 94404 0.69 0.931589
Target:  5'- uGCGGGGACCGcgguguggggCGcgCCCgacaaccuggaggccUACGGCg -3'
miRNA:   3'- gCGCUCUUGGCaa--------GCuaGGG---------------AUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 17013 0.69 0.929565
Target:  5'- gGCGAGAAcacCCGgcggCGGUCCC-AUGGa -3'
miRNA:   3'- gCGCUCUU---GGCaa--GCUAGGGaUGCCg -5'
10740 5' -53.7 NC_002794.1 + 128071 0.69 0.929565
Target:  5'- cCGUGAGGGCCGaaUGG-CCCgaguCGGCg -3'
miRNA:   3'- -GCGCUCUUGGCaaGCUaGGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 99549 0.69 0.929565
Target:  5'- cCGCGGaAACCGcgCGcgCCCUccGCGGg -3'
miRNA:   3'- -GCGCUcUUGGCaaGCuaGGGA--UGCCg -5'
10740 5' -53.7 NC_002794.1 + 90681 0.69 0.924341
Target:  5'- cCGCGuG-GCUGUUCGugugCCC-GCGGCa -3'
miRNA:   3'- -GCGCuCuUGGCAAGCua--GGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 110619 0.7 0.918888
Target:  5'- aGCGGGAGCCG--CGG-CgCCgcgGCGGCg -3'
miRNA:   3'- gCGCUCUUGGCaaGCUaG-GGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 159810 0.7 0.913204
Target:  5'- uCGCGAauGAgagcgACCGagugUUGGUCCCagACGGCg -3'
miRNA:   3'- -GCGCU--CU-----UGGCa---AGCUAGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 183090 0.7 0.894787
Target:  5'- aGCGAGGucgucaCGUUCcgGAUCCCgcacguguucgGCGGCg -3'
miRNA:   3'- gCGCUCUug----GCAAG--CUAGGGa----------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 129302 0.7 0.894787
Target:  5'- cCGCGAGGAUagcaucgcggUGUuuUCGAcgCCCgggGCGGCg -3'
miRNA:   3'- -GCGCUCUUG----------GCA--AGCUa-GGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 44532 0.71 0.881398
Target:  5'- cCGCGAGcgcGCCGUcgUCG-UCgCCgGCGGCg -3'
miRNA:   3'- -GCGCUCu--UGGCA--AGCuAG-GGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 55334 0.71 0.874381
Target:  5'- -cCGAGGAcCCGgggUCGcgCCCgagGCGGCc -3'
miRNA:   3'- gcGCUCUU-GGCa--AGCuaGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 185488 0.71 0.874381
Target:  5'- gGCGAGGggACCGccuauauaUUCGAUCuCCgcguCGGCg -3'
miRNA:   3'- gCGCUCU--UGGC--------AAGCUAG-GGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 145940 0.71 0.865684
Target:  5'- gGCGAGAGCgGUUCGGgagucgcgagcgCCCaGCGcGCc -3'
miRNA:   3'- gCGCUCUUGgCAAGCUa-----------GGGaUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.