miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 60688 0.67 0.969407
Target:  5'- uCGaCGGGAGCCGcgCGca-CUUugGGCa -3'
miRNA:   3'- -GC-GCUCUUGGCaaGCuagGGAugCCG- -5'
10740 5' -53.7 NC_002794.1 + 63996 0.74 0.708923
Target:  5'- aGCGGGcuCCGUcUGggUCCUGCGGCu -3'
miRNA:   3'- gCGCUCuuGGCAaGCuaGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 67714 0.68 0.956101
Target:  5'- aGCGGcAACagggGcUCGGUCCCgGCGGCg -3'
miRNA:   3'- gCGCUcUUGg---CaAGCUAGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 70311 0.67 0.979113
Target:  5'- gCGCGaAGAGCCGcUUCG--CCCgcgaagacgccgACGGCc -3'
miRNA:   3'- -GCGC-UCUUGGC-AAGCuaGGGa-----------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 75042 0.66 0.988432
Target:  5'- aGCc-GAGCCgGUUCGAUUCgCgaccgACGGCg -3'
miRNA:   3'- gCGcuCUUGG-CAAGCUAGG-Ga----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 76241 0.68 0.963172
Target:  5'- cCGCcGGGACCcaccuccgUCGAgacgCUCUACGGCc -3'
miRNA:   3'- -GCGcUCUUGGca------AGCUa---GGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 80882 0.66 0.985335
Target:  5'- gCGCGu--GCCc--CGAUCCCccgGCGGCc -3'
miRNA:   3'- -GCGCucuUGGcaaGCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 84762 0.76 0.639135
Target:  5'- cCGCGAGAggGCCGUcCGAggCCCggccCGGCu -3'
miRNA:   3'- -GCGCUCU--UGGCAaGCUa-GGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 86943 0.77 0.578984
Target:  5'- gGCGGGAuCCGgcgagcgUCGAcgUCCgCUGCGGCg -3'
miRNA:   3'- gCGCUCUuGGCa------AGCU--AGG-GAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 87301 0.66 0.981641
Target:  5'- aGCGGGccuacCCGguagCGGUCCCcagguccaGCGGCg -3'
miRNA:   3'- gCGCUCuu---GGCaa--GCUAGGGa-------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 89248 0.73 0.75705
Target:  5'- gGCGGGuACCGUcgcuggccgUCGAUCUCgACGGUg -3'
miRNA:   3'- gCGCUCuUGGCA---------AGCUAGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 89590 0.68 0.956101
Target:  5'- gGCcgucGAGCCGcgCGAUCCCggguCGGUu -3'
miRNA:   3'- gCGcu--CUUGGCaaGCUAGGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 90681 0.69 0.924341
Target:  5'- cCGCGuG-GCUGUUCGugugCCC-GCGGCa -3'
miRNA:   3'- -GCGCuCuUGGCAAGCua--GGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 91258 0.68 0.948159
Target:  5'- uCGCGGacGCCGUUCGuggaCCggcGCGGCc -3'
miRNA:   3'- -GCGCUcuUGGCAAGCuag-GGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 92947 0.72 0.811197
Target:  5'- cCGCGucaAGAACCGgcCcAUCCCgcgcgGCGGCa -3'
miRNA:   3'- -GCGC---UCUUGGCaaGcUAGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 94023 0.67 0.966392
Target:  5'- gGCGGGuuccGCCGg-CGggCCCgagaGCGGCg -3'
miRNA:   3'- gCGCUCu---UGGCaaGCuaGGGa---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 94404 0.69 0.931589
Target:  5'- uGCGGGGACCGcgguguggggCGcgCCCgacaaccuggaggccUACGGCg -3'
miRNA:   3'- gCGCUCUUGGCaa--------GCuaGGG---------------AUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95144 0.68 0.956101
Target:  5'- uGCGcGGGCUGUugugCGAUCaCCUgACGGUg -3'
miRNA:   3'- gCGCuCUUGGCAa---GCUAG-GGA-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95566 0.67 0.977291
Target:  5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3'
miRNA:   3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95861 0.69 0.934557
Target:  5'- gGCGGGcgGGCCGUUucaguguggCGA-CCCgGCGGCg -3'
miRNA:   3'- gCGCUC--UUGGCAA---------GCUaGGGaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.