miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 129302 0.7 0.894787
Target:  5'- cCGCGAGGAUagcaucgcggUGUuuUCGAcgCCCgggGCGGCg -3'
miRNA:   3'- -GCGCUCUUG----------GCA--AGCUa-GGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 129751 0.66 0.986954
Target:  5'- cCGCGuucugguacuucGGAuACCGgUgGAUCCUgcgACGGCg -3'
miRNA:   3'- -GCGC------------UCU-UGGCaAgCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 130525 0.69 0.943852
Target:  5'- aGCGGGcuGACCGUgaCGAuUUCCgacGCGGCg -3'
miRNA:   3'- gCGCUC--UUGGCAa-GCU-AGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 133728 0.78 0.539522
Target:  5'- uGCGGGAagaucugcuGCCGUUCGGUCgCCUGCaGGg -3'
miRNA:   3'- gCGCUCU---------UGGCAAGCUAG-GGAUG-CCg -5'
10740 5' -53.7 NC_002794.1 + 136470 0.69 0.943852
Target:  5'- gGCGAGGuucGCCGcguacaggUCGAUgCCUucGCGGUu -3'
miRNA:   3'- gCGCUCU---UGGCa-------AGCUAgGGA--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 137594 0.68 0.948159
Target:  5'- uGCgGGGAGCCGccgccggCGGUCgCgGCGGCg -3'
miRNA:   3'- gCG-CUCUUGGCaa-----GCUAGgGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 140560 0.66 0.987561
Target:  5'- aCGCGAcgaccugcggugucaGAAuCCGUUCG--CCCUGuCGGUg -3'
miRNA:   3'- -GCGCU---------------CUU-GGCAAGCuaGGGAU-GCCG- -5'
10740 5' -53.7 NC_002794.1 + 141178 1.13 0.004417
Target:  5'- uCGCGAGAACCGUUCGAUCCCUACGGCg -3'
miRNA:   3'- -GCGCUCUUGGCAAGCUAGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 141676 0.66 0.981641
Target:  5'- aGCGaAGAcgggucGCCGUacgCGGUCCCgucgUGGCc -3'
miRNA:   3'- gCGC-UCU------UGGCAa--GCUAGGGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 142041 0.69 0.939319
Target:  5'- uCGCG-GGACCGUaccggCGGUUCCggUGCGGg -3'
miRNA:   3'- -GCGCuCUUGGCAa----GCUAGGG--AUGCCg -5'
10740 5' -53.7 NC_002794.1 + 143805 0.66 0.981641
Target:  5'- uCGCGuacacGCCG-UCGGUUCCcAUGGCg -3'
miRNA:   3'- -GCGCucu--UGGCaAGCUAGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 145092 0.69 0.943852
Target:  5'- gGUGuuGAACCGgaCGGUCCuCUacGCGGUg -3'
miRNA:   3'- gCGCu-CUUGGCaaGCUAGG-GA--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 145940 0.71 0.865684
Target:  5'- gGCGAGAGCgGUUCGGgagucgcgagcgCCCaGCGcGCc -3'
miRNA:   3'- gCGCUCUUGgCAAGCUa-----------GGGaUGC-CG- -5'
10740 5' -53.7 NC_002794.1 + 149697 0.72 0.808609
Target:  5'- cCGCGGGGGCCGccuggCGGgugggccgccugccUCgCUACGGCg -3'
miRNA:   3'- -GCGCUCUUGGCaa---GCU--------------AGgGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 152582 0.76 0.619027
Target:  5'- cCGCGGcGGCCGccaCG-UCCCUGCGGCg -3'
miRNA:   3'- -GCGCUcUUGGCaa-GCuAGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 154318 0.66 0.985335
Target:  5'- uCGgGAGAGCgGcgUCGGucgUCCCgggugccGCGGCc -3'
miRNA:   3'- -GCgCUCUUGgCa-AGCU---AGGGa------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 157634 0.67 0.979552
Target:  5'- uGCGAGcuguacaucACCGagcaCGAUCCCgacgcgcugGCGGCu -3'
miRNA:   3'- gCGCUCu--------UGGCaa--GCUAGGGa--------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 159810 0.7 0.913204
Target:  5'- uCGCGAauGAgagcgACCGagugUUGGUCCCagACGGCg -3'
miRNA:   3'- -GCGCU--CU-----UGGCa---AGCUAGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 160356 0.69 0.943852
Target:  5'- cCGCGGcGAGCg---UGAUgCCUACGGCg -3'
miRNA:   3'- -GCGCU-CUUGgcaaGCUAgGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 161571 0.69 0.943852
Target:  5'- uCGCGgcGGAGCCG-UCGGUCUcgucugauucgaCUGCGGg -3'
miRNA:   3'- -GCGC--UCUUGGCaAGCUAGG------------GAUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.