miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 176520 0.69 0.939319
Target:  5'- aGCGuucGAGCgUGUcgcaUCGGUCCCUuugggcgacGCGGCg -3'
miRNA:   3'- gCGCu--CUUG-GCA----AGCUAGGGA---------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 178068 0.68 0.956101
Target:  5'- aGCGAGGgauCCGggugUCGAgaguacacgaUCCCggUACGGUg -3'
miRNA:   3'- gCGCUCUu--GGCa---AGCU----------AGGG--AUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 178811 0.66 0.985335
Target:  5'- cCGgGGGGACCGggcacUCGGgucUCCC-GCGGg -3'
miRNA:   3'- -GCgCUCUUGGCa----AGCU---AGGGaUGCCg -5'
10740 5' -53.7 NC_002794.1 + 179659 0.68 0.963172
Target:  5'- gGCGGGcucGCCGgaCGGcaCCCgcgGCGGCg -3'
miRNA:   3'- gCGCUCu--UGGCaaGCUa-GGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 180732 0.68 0.963172
Target:  5'- aCGCGcGGAcgacGCCGUcCGGcUCCUcgGCGGCu -3'
miRNA:   3'- -GCGC-UCU----UGGCAaGCU-AGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 183090 0.7 0.894787
Target:  5'- aGCGAGGucgucaCGUUCcgGAUCCCgcacguguucgGCGGCg -3'
miRNA:   3'- gCGCUCUug----GCAAG--CUAGGGa----------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 185407 0.68 0.959743
Target:  5'- gCGCGGGcccGACCGccgUCGA-CUCgacGCGGCg -3'
miRNA:   3'- -GCGCUC---UUGGCa--AGCUaGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 185488 0.71 0.874381
Target:  5'- gGCGAGGggACCGccuauauaUUCGAUCuCCgcguCGGCg -3'
miRNA:   3'- gCGCUCU--UGGC--------AAGCUAG-GGau--GCCG- -5'
10740 5' -53.7 NC_002794.1 + 186647 0.67 0.974851
Target:  5'- gCGCGGGucgGCCGcgCGcacCCCguacACGGCg -3'
miRNA:   3'- -GCGCUCu--UGGCaaGCua-GGGa---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 189016 0.69 0.939319
Target:  5'- uCGCGAcaggccagGAGCCGcUCGAcCgCCaGCGGCg -3'
miRNA:   3'- -GCGCU--------CUUGGCaAGCUaG-GGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 189529 0.69 0.939319
Target:  5'- aGCGGGuGCCGcucccagUCGAUCCaccacAUGGCg -3'
miRNA:   3'- gCGCUCuUGGCa------AGCUAGGga---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 189784 0.69 0.939319
Target:  5'- cCGCGGGAugCGgaaaucgccgUCGAaCCCcgGCGGg -3'
miRNA:   3'- -GCGCUCUugGCa---------AGCUaGGGa-UGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.