miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 117191 0.68 0.959743
Target:  5'- uCGCGcaGAUCGgcgUCGggCCCggGCGGCu -3'
miRNA:   3'- -GCGCucUUGGCa--AGCuaGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 113560 0.66 0.98829
Target:  5'- gGCGccGGACCGUcugcgucUCGGcgUCCUgcacgACGGCg -3'
miRNA:   3'- gCGCu-CUUGGCA-------AGCU--AGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 111107 0.66 0.988432
Target:  5'- gGCGGGAccgugGCCG-UCGAcggCgCCgGCGGCc -3'
miRNA:   3'- gCGCUCU-----UGGCaAGCUa--G-GGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 110619 0.7 0.918888
Target:  5'- aGCGGGAGCCG--CGG-CgCCgcgGCGGCg -3'
miRNA:   3'- gCGCUCUUGGCaaGCUaG-GGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 108195 0.74 0.722604
Target:  5'- uGCGAGcGgcgcugcgccgccgcGCCGgccUCGcgCCCUGCGGCa -3'
miRNA:   3'- gCGCUC-U---------------UGGCa--AGCuaGGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 107310 0.66 0.984292
Target:  5'- uCGCGGGGgcGCCGUccgcgcgguucggcuUCGGUCCgUGggucCGGUc -3'
miRNA:   3'- -GCGCUCU--UGGCA---------------AGCUAGGgAU----GCCG- -5'
10740 5' -53.7 NC_002794.1 + 106393 0.66 0.988432
Target:  5'- gGCGGgcGAACgG-UCGGaCCCcgGCGGCg -3'
miRNA:   3'- gCGCU--CUUGgCaAGCUaGGGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 106264 0.67 0.974851
Target:  5'- gGCGAGcGCCGcgcgUCGcgCCgCcucggACGGCg -3'
miRNA:   3'- gCGCUCuUGGCa---AGCuaGG-Ga----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 100586 0.67 0.969407
Target:  5'- aCGCucGGGCCGUgcgcgcCGAUCCCgGgGGUg -3'
miRNA:   3'- -GCGcuCUUGGCAa-----GCUAGGGaUgCCG- -5'
10740 5' -53.7 NC_002794.1 + 99549 0.69 0.929565
Target:  5'- cCGCGGaAACCGcgCGcgCCCUccGCGGg -3'
miRNA:   3'- -GCGCUcUUGGCaaGCuaGGGA--UGCCg -5'
10740 5' -53.7 NC_002794.1 + 96400 0.66 0.985165
Target:  5'- uCGCGccuuACCGgcgcuucUUCGAUCUCggcGCGGCg -3'
miRNA:   3'- -GCGCucu-UGGC-------AAGCUAGGGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 96190 0.69 0.934557
Target:  5'- gGCGccuGCCGgcCGAgUCCCUGcCGGCg -3'
miRNA:   3'- gCGCucuUGGCaaGCU-AGGGAU-GCCG- -5'
10740 5' -53.7 NC_002794.1 + 95861 0.69 0.934557
Target:  5'- gGCGGGcgGGCCGUUucaguguggCGA-CCCgGCGGCg -3'
miRNA:   3'- gCGCUC--UUGGCAA---------GCUaGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95566 0.67 0.977291
Target:  5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3'
miRNA:   3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 95144 0.68 0.956101
Target:  5'- uGCGcGGGCUGUugugCGAUCaCCUgACGGUg -3'
miRNA:   3'- gCGCuCUUGGCAa---GCUAG-GGA-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 94404 0.69 0.931589
Target:  5'- uGCGGGGACCGcgguguggggCGcgCCCgacaaccuggaggccUACGGCg -3'
miRNA:   3'- gCGCUCUUGGCaa--------GCuaGGG---------------AUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 94023 0.67 0.966392
Target:  5'- gGCGGGuuccGCCGg-CGggCCCgagaGCGGCg -3'
miRNA:   3'- gCGCUCu---UGGCaaGCuaGGGa---UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 92947 0.72 0.811197
Target:  5'- cCGCGucaAGAACCGgcCcAUCCCgcgcgGCGGCa -3'
miRNA:   3'- -GCGC---UCUUGGCaaGcUAGGGa----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 91258 0.68 0.948159
Target:  5'- uCGCGGacGCCGUUCGuggaCCggcGCGGCc -3'
miRNA:   3'- -GCGCUcuUGGCAAGCuag-GGa--UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 90681 0.69 0.924341
Target:  5'- cCGCGuG-GCUGUUCGugugCCC-GCGGCa -3'
miRNA:   3'- -GCGCuCuUGGCAAGCua--GGGaUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.