Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 89590 | 0.68 | 0.956101 |
Target: 5'- gGCcgucGAGCCGcgCGAUCCCggguCGGUu -3' miRNA: 3'- gCGcu--CUUGGCaaGCUAGGGau--GCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 89248 | 0.73 | 0.75705 |
Target: 5'- gGCGGGuACCGUcgcuggccgUCGAUCUCgACGGUg -3' miRNA: 3'- gCGCUCuUGGCA---------AGCUAGGGaUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 87301 | 0.66 | 0.981641 |
Target: 5'- aGCGGGccuacCCGguagCGGUCCCcagguccaGCGGCg -3' miRNA: 3'- gCGCUCuu---GGCaa--GCUAGGGa-------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 86943 | 0.77 | 0.578984 |
Target: 5'- gGCGGGAuCCGgcgagcgUCGAcgUCCgCUGCGGCg -3' miRNA: 3'- gCGCUCUuGGCa------AGCU--AGG-GAUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 84762 | 0.76 | 0.639135 |
Target: 5'- cCGCGAGAggGCCGUcCGAggCCCggccCGGCu -3' miRNA: 3'- -GCGCUCU--UGGCAaGCUa-GGGau--GCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 80882 | 0.66 | 0.985335 |
Target: 5'- gCGCGu--GCCc--CGAUCCCccgGCGGCc -3' miRNA: 3'- -GCGCucuUGGcaaGCUAGGGa--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 76241 | 0.68 | 0.963172 |
Target: 5'- cCGCcGGGACCcaccuccgUCGAgacgCUCUACGGCc -3' miRNA: 3'- -GCGcUCUUGGca------AGCUa---GGGAUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 75042 | 0.66 | 0.988432 |
Target: 5'- aGCc-GAGCCgGUUCGAUUCgCgaccgACGGCg -3' miRNA: 3'- gCGcuCUUGG-CAAGCUAGG-Ga----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 70311 | 0.67 | 0.979113 |
Target: 5'- gCGCGaAGAGCCGcUUCG--CCCgcgaagacgccgACGGCc -3' miRNA: 3'- -GCGC-UCUUGGC-AAGCuaGGGa-----------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 67714 | 0.68 | 0.956101 |
Target: 5'- aGCGGcAACagggGcUCGGUCCCgGCGGCg -3' miRNA: 3'- gCGCUcUUGg---CaAGCUAGGGaUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 63996 | 0.74 | 0.708923 |
Target: 5'- aGCGGGcuCCGUcUGggUCCUGCGGCu -3' miRNA: 3'- gCGCUCuuGGCAaGCuaGGGAUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 60688 | 0.67 | 0.969407 |
Target: 5'- uCGaCGGGAGCCGcgCGca-CUUugGGCa -3' miRNA: 3'- -GC-GCUCUUGGCaaGCuagGGAugCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 60619 | 0.66 | 0.985335 |
Target: 5'- aGC-AGAACCGgacgggCGGaCCCggcgccgGCGGCg -3' miRNA: 3'- gCGcUCUUGGCaa----GCUaGGGa------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 57702 | 0.75 | 0.699074 |
Target: 5'- gGCGAGAAgaaCGUggcgcUCGAgcaCCUGCGGCg -3' miRNA: 3'- gCGCUCUUg--GCA-----AGCUag-GGAUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 55334 | 0.71 | 0.874381 |
Target: 5'- -cCGAGGAcCCGgggUCGcgCCCgagGCGGCc -3' miRNA: 3'- gcGCUCUU-GGCa--AGCuaGGGa--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 53809 | 0.66 | 0.988432 |
Target: 5'- gGCGGGAGCCucggCGGgagCCU-CGGCg -3' miRNA: 3'- gCGCUCUUGGcaa-GCUag-GGAuGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 48977 | 0.66 | 0.983566 |
Target: 5'- cCGCGgccaagccuccaGGccCCGUUCGAagcucUCCCgcgccGCGGCg -3' miRNA: 3'- -GCGC------------UCuuGGCAAGCU-----AGGGa----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 44532 | 0.71 | 0.881398 |
Target: 5'- cCGCGAGcgcGCCGUcgUCG-UCgCCgGCGGCg -3' miRNA: 3'- -GCGCUCu--UGGCA--AGCuAG-GGaUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 40446 | 0.67 | 0.969115 |
Target: 5'- aGUGGGAGcgaugccCCGggCGcuGUCCCUucggGCGGCu -3' miRNA: 3'- gCGCUCUU-------GGCaaGC--UAGGGA----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 40121 | 0.66 | 0.981641 |
Target: 5'- gCGCGAGAGCgGagagccaCGggCUCUccGCGGCu -3' miRNA: 3'- -GCGCUCUUGgCaa-----GCuaGGGA--UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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