miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10740 5' -53.7 NC_002794.1 + 36359 0.68 0.959743
Target:  5'- gCGCGGccACCGggugCGcgCCC-GCGGCg -3'
miRNA:   3'- -GCGCUcuUGGCaa--GCuaGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 34553 0.66 0.981641
Target:  5'- cCGCGugcuGAccCCGUuccucgugUCGAU-CCUGCGGCu -3'
miRNA:   3'- -GCGCu---CUu-GGCA--------AGCUAgGGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 30323 0.66 0.986954
Target:  5'- uGCGAGGAUCGUcgccgaagUCGAuggccaccuUCCCgagcgACaGGCc -3'
miRNA:   3'- gCGCUCUUGGCA--------AGCU---------AGGGa----UG-CCG- -5'
10740 5' -53.7 NC_002794.1 + 19474 0.66 0.986954
Target:  5'- gGCGGGAcccGCCGgUCG--CCCgcaccgacgACGGCg -3'
miRNA:   3'- gCGCUCU---UGGCaAGCuaGGGa--------UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 17013 0.69 0.929565
Target:  5'- gGCGAGAAcacCCGgcggCGGUCCC-AUGGa -3'
miRNA:   3'- gCGCUCUU---GGCaa--GCUAGGGaUGCCg -5'
10740 5' -53.7 NC_002794.1 + 14454 0.66 0.983006
Target:  5'- cCGCGGGcGACCGUgUCGAgcggcgcgccgcgcUCgCUguucGCGGCg -3'
miRNA:   3'- -GCGCUC-UUGGCA-AGCU--------------AGgGA----UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 13957 0.68 0.956101
Target:  5'- uGCGugucGAGCCGcUCGGagacguUCgCUGCGGCc -3'
miRNA:   3'- gCGCu---CUUGGCaAGCU------AGgGAUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 13103 0.67 0.974851
Target:  5'- gGaCGAGGugCGUUCGGcggggUCgCCgcGCGGCu -3'
miRNA:   3'- gC-GCUCUugGCAAGCU-----AG-GGa-UGCCG- -5'
10740 5' -53.7 NC_002794.1 + 10641 0.66 0.983566
Target:  5'- gGCGGGGAgCGgcgCGAgCCCgACGaGCg -3'
miRNA:   3'- gCGCUCUUgGCaa-GCUaGGGaUGC-CG- -5'
10740 5' -53.7 NC_002794.1 + 8833 0.72 0.81972
Target:  5'- aCGUGAGGACCaucaUGAUCCagGCGGCg -3'
miRNA:   3'- -GCGCUCUUGGcaa-GCUAGGgaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 746 0.69 0.943852
Target:  5'- uCGCGGGGcucuGCCGUUuugcCGggCCC-GCGGUg -3'
miRNA:   3'- -GCGCUCU----UGGCAA----GCuaGGGaUGCCG- -5'
10740 5' -53.7 NC_002794.1 + 350 0.66 0.986
Target:  5'- gCGCGAcggcaGAuuuucacggcaaacgGCCGcgCGAUCCC--CGGCa -3'
miRNA:   3'- -GCGCU-----CU---------------UGGCaaGCUAGGGauGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.