Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 140560 | 0.66 | 0.987561 |
Target: 5'- aCGCGAcgaccugcggugucaGAAuCCGUUCG--CCCUGuCGGUg -3' miRNA: 3'- -GCGCU---------------CUU-GGCAAGCuaGGGAU-GCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 113560 | 0.66 | 0.98829 |
Target: 5'- gGCGccGGACCGUcugcgucUCGGcgUCCUgcacgACGGCg -3' miRNA: 3'- gCGCu-CUUGGCA-------AGCU--AGGGa----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 75042 | 0.66 | 0.988432 |
Target: 5'- aGCc-GAGCCgGUUCGAUUCgCgaccgACGGCg -3' miRNA: 3'- gCGcuCUUGG-CAAGCUAGG-Ga----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 111107 | 0.66 | 0.988432 |
Target: 5'- gGCGGGAccgugGCCG-UCGAcggCgCCgGCGGCc -3' miRNA: 3'- gCGCUCU-----UGGCaAGCUa--G-GGaUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 53809 | 0.66 | 0.988432 |
Target: 5'- gGCGGGAGCCucggCGGgagCCU-CGGCg -3' miRNA: 3'- gCGCUCUUGGcaa-GCUag-GGAuGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 178811 | 0.66 | 0.985335 |
Target: 5'- cCGgGGGGACCGggcacUCGGgucUCCC-GCGGg -3' miRNA: 3'- -GCgCUCUUGGCa----AGCU---AGGGaUGCCg -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 96400 | 0.66 | 0.985165 |
Target: 5'- uCGCGccuuACCGgcgcuucUUCGAUCUCggcGCGGCg -3' miRNA: 3'- -GCGCucu-UGGC-------AAGCUAGGGa--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 157634 | 0.67 | 0.979552 |
Target: 5'- uGCGAGcuguacaucACCGagcaCGAUCCCgacgcgcugGCGGCu -3' miRNA: 3'- gCGCUCu--------UGGCaa--GCUAGGGa--------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 141676 | 0.66 | 0.981641 |
Target: 5'- aGCGaAGAcgggucGCCGUacgCGGUCCCgucgUGGCc -3' miRNA: 3'- gCGC-UCU------UGGCAa--GCUAGGGau--GCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 87301 | 0.66 | 0.981641 |
Target: 5'- aGCGGGccuacCCGguagCGGUCCCcagguccaGCGGCg -3' miRNA: 3'- gCGCUCuu---GGCaa--GCUAGGGa-------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 40121 | 0.66 | 0.981641 |
Target: 5'- gCGCGAGAGCgGagagccaCGggCUCUccGCGGCu -3' miRNA: 3'- -GCGCUCUUGgCaa-----GCuaGGGA--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 128278 | 0.66 | 0.981641 |
Target: 5'- gCGCG-GAGCCGacggccgucUUCGAcaCCgagACGGCg -3' miRNA: 3'- -GCGCuCUUGGC---------AAGCUagGGa--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 143805 | 0.66 | 0.981641 |
Target: 5'- uCGCGuacacGCCG-UCGGUUCCcAUGGCg -3' miRNA: 3'- -GCGCucu--UGGCaAGCUAGGGaUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 34553 | 0.66 | 0.981641 |
Target: 5'- cCGCGugcuGAccCCGUuccucgugUCGAU-CCUGCGGCu -3' miRNA: 3'- -GCGCu---CUu-GGCA--------AGCUAgGGAUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 14454 | 0.66 | 0.983006 |
Target: 5'- cCGCGGGcGACCGUgUCGAgcggcgcgccgcgcUCgCUguucGCGGCg -3' miRNA: 3'- -GCGCUC-UUGGCA-AGCU--------------AGgGA----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 10641 | 0.66 | 0.983566 |
Target: 5'- gGCGGGGAgCGgcgCGAgCCCgACGaGCg -3' miRNA: 3'- gCGCUCUUgGCaa-GCUaGGGaUGC-CG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 48977 | 0.66 | 0.983566 |
Target: 5'- cCGCGgccaagccuccaGGccCCGUUCGAagcucUCCCgcgccGCGGCg -3' miRNA: 3'- -GCGC------------UCuuGGCAAGCU-----AGGGa----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 121927 | 0.66 | 0.984646 |
Target: 5'- cCGCGGGGgaagaggccgacgcGCUGaUCGAgcgccuggagcgcUCCgUGCGGCu -3' miRNA: 3'- -GCGCUCU--------------UGGCaAGCU-------------AGGgAUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 107310 | 0.66 | 0.984292 |
Target: 5'- uCGCGGGGgcGCCGUccgcgcgguucggcuUCGGUCCgUGggucCGGUc -3' miRNA: 3'- -GCGCUCU--UGGCA---------------AGCUAGGgAU----GCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 60619 | 0.66 | 0.985335 |
Target: 5'- aGC-AGAACCGgacgggCGGaCCCggcgccgGCGGCg -3' miRNA: 3'- gCGcUCUUGGCaa----GCUaGGGa------UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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