Results 81 - 92 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10740 | 5' | -53.7 | NC_002794.1 | + | 13103 | 0.67 | 0.974851 |
Target: 5'- gGaCGAGGugCGUUCGGcggggUCgCCgcGCGGCu -3' miRNA: 3'- gC-GCUCUugGCAAGCU-----AG-GGa-UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 100586 | 0.67 | 0.969407 |
Target: 5'- aCGCucGGGCCGUgcgcgcCGAUCCCgGgGGUg -3' miRNA: 3'- -GCGcuCUUGGCAa-----GCUAGGGaUgCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 128278 | 0.66 | 0.981641 |
Target: 5'- gCGCG-GAGCCGacggccgucUUCGAcaCCgagACGGCg -3' miRNA: 3'- -GCGCuCUUGGC---------AAGCUagGGa--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 40121 | 0.66 | 0.981641 |
Target: 5'- gCGCGAGAGCgGagagccaCGggCUCUccGCGGCu -3' miRNA: 3'- -GCGCUCUUGgCaa-----GCuaGGGA--UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 87301 | 0.66 | 0.981641 |
Target: 5'- aGCGGGccuacCCGguagCGGUCCCcagguccaGCGGCg -3' miRNA: 3'- gCGCUCuu---GGCaa--GCUAGGGa-------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 141676 | 0.66 | 0.981641 |
Target: 5'- aGCGaAGAcgggucGCCGUacgCGGUCCCgucgUGGCc -3' miRNA: 3'- gCGC-UCU------UGGCAa--GCUAGGGau--GCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 157634 | 0.67 | 0.979552 |
Target: 5'- uGCGAGcuguacaucACCGagcaCGAUCCCgacgcgcugGCGGCu -3' miRNA: 3'- gCGCUCu--------UGGCaa--GCUAGGGa--------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 70311 | 0.67 | 0.979113 |
Target: 5'- gCGCGaAGAGCCGcUUCG--CCCgcgaagacgccgACGGCc -3' miRNA: 3'- -GCGC-UCUUGGC-AAGCuaGGGa-----------UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 95566 | 0.67 | 0.977291 |
Target: 5'- gGCGAGGACgagcggcucuaUGUcggcUCGAUCUacGCGGCg -3' miRNA: 3'- gCGCUCUUG-----------GCA----AGCUAGGgaUGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 186647 | 0.67 | 0.974851 |
Target: 5'- gCGCGGGucgGCCGcgCGcacCCCguacACGGCg -3' miRNA: 3'- -GCGCUCu--UGGCaaGCua-GGGa---UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 106264 | 0.67 | 0.974851 |
Target: 5'- gGCGAGcGCCGcgcgUCGcgCCgCcucggACGGCg -3' miRNA: 3'- gCGCUCuUGGCa---AGCuaGG-Ga----UGCCG- -5' |
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10740 | 5' | -53.7 | NC_002794.1 | + | 89590 | 0.68 | 0.956101 |
Target: 5'- gGCcgucGAGCCGcgCGAUCCCggguCGGUu -3' miRNA: 3'- gCGcu--CUUGGCaaGCUAGGGau--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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