miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10741 5' -53.6 NC_002794.1 + 100353 0.66 0.984392
Target:  5'- cCGCCGAGCuggAGGUGgacuGCGaGGUGG-CCGa -3'
miRNA:   3'- -GUGGUUCG---UUCAC----UGCaUCGCCaGGC- -5'
10741 5' -53.6 NC_002794.1 + 47741 0.66 0.984392
Target:  5'- cCGCCGGGUccacGUGGCGgccGUGGUCgCGg -3'
miRNA:   3'- -GUGGUUCGuu--CACUGCau-CGCCAG-GC- -5'
10741 5' -53.6 NC_002794.1 + 153123 0.66 0.984392
Target:  5'- -uUCGGGUucGGUGGCGgcAGCGgGUCCGg -3'
miRNA:   3'- guGGUUCGu-UCACUGCa-UCGC-CAGGC- -5'
10741 5' -53.6 NC_002794.1 + 12196 0.66 0.98328
Target:  5'- gGCCGGGCGccgcucggacgugccGGcGGCGUcGGCGGcgCCGg -3'
miRNA:   3'- gUGGUUCGU---------------UCaCUGCA-UCGCCa-GGC- -5'
10741 5' -53.6 NC_002794.1 + 94864 0.66 0.982507
Target:  5'- aCGCU--GgAGGUGACGUuuacggAGCGGaUCCGg -3'
miRNA:   3'- -GUGGuuCgUUCACUGCA------UCGCC-AGGC- -5'
10741 5' -53.6 NC_002794.1 + 8113 0.66 0.980456
Target:  5'- cCACCGAGCGGGcGGCGgccuccuCGGUgaCCGg -3'
miRNA:   3'- -GUGGUUCGUUCaCUGCauc----GCCA--GGC- -5'
10741 5' -53.6 NC_002794.1 + 55171 0.66 0.980456
Target:  5'- gCGCCGAGCGGGcGACucgaggcGGCGGcCCu -3'
miRNA:   3'- -GUGGUUCGUUCaCUGca-----UCGCCaGGc -5'
10741 5' -53.6 NC_002794.1 + 116442 0.66 0.980456
Target:  5'- aCGCCGacgguGGCGA-UGACGaagAGCGG-CCGg -3'
miRNA:   3'- -GUGGU-----UCGUUcACUGCa--UCGCCaGGC- -5'
10741 5' -53.6 NC_002794.1 + 141739 0.66 0.980456
Target:  5'- aACCGuaCAAGuUGACGUacuuggacgAGCGGUUCGa -3'
miRNA:   3'- gUGGUucGUUC-ACUGCA---------UCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 119952 0.66 0.978231
Target:  5'- gCGCC-AGCAGGUcGAgCGUgcucuGGUGGUUCGa -3'
miRNA:   3'- -GUGGuUCGUUCA-CU-GCA-----UCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 132595 0.66 0.978231
Target:  5'- uCACCGGGC--GUGACGUgguucAGCGGg-CGa -3'
miRNA:   3'- -GUGGUUCGuuCACUGCA-----UCGCCagGC- -5'
10741 5' -53.6 NC_002794.1 + 157997 0.66 0.978231
Target:  5'- gACCgGAGCcGGUGGgGUGGCGGaUCa- -3'
miRNA:   3'- gUGG-UUCGuUCACUgCAUCGCC-AGgc -5'
10741 5' -53.6 NC_002794.1 + 70676 0.66 0.978231
Target:  5'- cCGCCGcGGC-GGUGACGUccugucgccgcuGGgGGUCCc -3'
miRNA:   3'- -GUGGU-UCGuUCACUGCA------------UCgCCAGGc -5'
10741 5' -53.6 NC_002794.1 + 86922 0.66 0.975824
Target:  5'- aCGCCcguGGCGGGcaGGCGgGGCGGgaUCCGg -3'
miRNA:   3'- -GUGGu--UCGUUCa-CUGCaUCGCC--AGGC- -5'
10741 5' -53.6 NC_002794.1 + 65925 0.66 0.975824
Target:  5'- uCGCC-GGCGgcGGUGGCGUcggcGGCGGUaUCGu -3'
miRNA:   3'- -GUGGuUCGU--UCACUGCA----UCGCCA-GGC- -5'
10741 5' -53.6 NC_002794.1 + 87152 0.66 0.974808
Target:  5'- gGCCGGGCGGGUGGgGgugcaggccgGGCGGgugggggugcaggCCGg -3'
miRNA:   3'- gUGGUUCGUUCACUgCa---------UCGCCa------------GGC- -5'
10741 5' -53.6 NC_002794.1 + 87089 0.66 0.974808
Target:  5'- gGCCGGGCGGGUGGgGgugcaggccgGGCGGgugggggugcaggCCGg -3'
miRNA:   3'- gUGGUUCGUUCACUgCa---------UCGCCa------------GGC- -5'
10741 5' -53.6 NC_002794.1 + 87215 0.66 0.974808
Target:  5'- gGCCGGGCGGGUGGgGgugcaggccgGGCGGgugggggugcaggCCGg -3'
miRNA:   3'- gUGGUUCGUUCACUgCa---------UCGCCa------------GGC- -5'
10741 5' -53.6 NC_002794.1 + 137375 0.66 0.973227
Target:  5'- aGCCGGGCGAGcGcCGacGCGgGUCCGg -3'
miRNA:   3'- gUGGUUCGUUCaCuGCauCGC-CAGGC- -5'
10741 5' -53.6 NC_002794.1 + 182292 0.66 0.972957
Target:  5'- gACgGGGCGGGUGgacgggcagacggGCGgacgGGCGGUCgGg -3'
miRNA:   3'- gUGgUUCGUUCAC-------------UGCa---UCGCCAGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.