Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10741 | 5' | -53.6 | NC_002794.1 | + | 133192 | 1.08 | 0.007767 |
Target: 5'- uCACCAAGCAAGUGACGUAGCGGUCCGc -3' miRNA: 3'- -GUGGUUCGUUCACUGCAUCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 55989 | 0.78 | 0.466783 |
Target: 5'- aGCCGcgGGCGAGcaccagcaUGACGUAGCGGUCgGa -3' miRNA: 3'- gUGGU--UCGUUC--------ACUGCAUCGCCAGgC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 37612 | 0.74 | 0.716211 |
Target: 5'- gCACCGAGaAGGUGACGUcGCGGaccCCGu -3' miRNA: 3'- -GUGGUUCgUUCACUGCAuCGCCa--GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 145922 | 0.73 | 0.764782 |
Target: 5'- gCGCCGAGCGgagGGgccGGCGagAGCGGUUCGg -3' miRNA: 3'- -GUGGUUCGU---UCa--CUGCa-UCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 94197 | 0.73 | 0.75239 |
Target: 5'- gGCCAAGCGguugcgcuugugacGGUGGCGgcgacgGGCGGgcgggCCGg -3' miRNA: 3'- gUGGUUCGU--------------UCACUGCa-----UCGCCa----GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 115565 | 0.72 | 0.792588 |
Target: 5'- aGCCGAGCAgcucggcgaacGG-GACGUAGCGG-CUGc -3' miRNA: 3'- gUGGUUCGU-----------UCaCUGCAUCGCCaGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 87278 | 0.72 | 0.783452 |
Target: 5'- gGCCGGGCGGGUGgggguggggaaGCGggccuacccggUAGCGGUCCc -3' miRNA: 3'- gUGGUUCGUUCAC-----------UGC-----------AUCGCCAGGc -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 32017 | 0.72 | 0.80158 |
Target: 5'- gACCAGGCAGGgGACGcGGCGcugCCGa -3' miRNA: 3'- gUGGUUCGUUCaCUGCaUCGCca-GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 124997 | 0.72 | 0.80158 |
Target: 5'- gCGCCAAGCGAcaccCGaAGCGGUCCGc -3' miRNA: 3'- -GUGGUUCGUUcacuGCaUCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 43609 | 0.69 | 0.92527 |
Target: 5'- gCACCAGGCAGcagGACGUGGCcG-CCa -3' miRNA: 3'- -GUGGUUCGUUca-CUGCAUCGcCaGGc -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 31738 | 0.69 | 0.919765 |
Target: 5'- gACCGGGCGGGcGaACGaAGCGGUCg- -3' miRNA: 3'- gUGGUUCGUUCaC-UGCaUCGCCAGgc -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 95828 | 0.68 | 0.94491 |
Target: 5'- gGCCGGGgGAGcGGCGgcGGCGG-CCGg -3' miRNA: 3'- gUGGUUCgUUCaCUGCa-UCGCCaGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 95561 | 0.68 | 0.949231 |
Target: 5'- aGCUggGCGAG-GACG-AGCGGcUCUa -3' miRNA: 3'- gUGGuuCGUUCaCUGCaUCGCC-AGGc -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 41865 | 0.68 | 0.948809 |
Target: 5'- cCGCCGGGCAGGgccgGgcgcugccacgccACGUAGCGcUCCa -3' miRNA: 3'- -GUGGUUCGUUCa---C-------------UGCAUCGCcAGGc -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 80406 | 0.68 | 0.95332 |
Target: 5'- uCGCCGcGGCccAGGUGGCGccgGGCGGggCCGc -3' miRNA: 3'- -GUGGU-UCG--UUCACUGCa--UCGCCa-GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 68281 | 0.67 | 0.970145 |
Target: 5'- gCACCGGGCcAGccgGGCGUacgaacgccucguGGCGG-CCGa -3' miRNA: 3'- -GUGGUUCGuUCa--CUGCA-------------UCGCCaGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 92274 | 0.67 | 0.964567 |
Target: 5'- gCGCCGGGCGAGgcgcgcaaggucggcGACGaGGCGGggCUGg -3' miRNA: 3'- -GUGGUUCGUUCa--------------CUGCaUCGCCa-GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 122320 | 0.67 | 0.963904 |
Target: 5'- uCGCCGuGCGcGUGGCGUuggcccuGGCcGUCCGg -3' miRNA: 3'- -GUGGUuCGUuCACUGCA-------UCGcCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 18689 | 0.67 | 0.960819 |
Target: 5'- cCGCCGucuccGGCAc--GGCGgcGGCGGUCCGg -3' miRNA: 3'- -GUGGU-----UCGUucaCUGCa-UCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 38947 | 0.67 | 0.970435 |
Target: 5'- aCGCCGGGCAGaucgucgccuacGUGACGUucauGCaGUUCGu -3' miRNA: 3'- -GUGGUUCGUU------------CACUGCAu---CGcCAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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