miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10741 5' -53.6 NC_002794.1 + 8113 0.66 0.980456
Target:  5'- cCACCGAGCGGGcGGCGgccuccuCGGUgaCCGg -3'
miRNA:   3'- -GUGGUUCGUUCaCUGCauc----GCCA--GGC- -5'
10741 5' -53.6 NC_002794.1 + 12196 0.66 0.98328
Target:  5'- gGCCGGGCGccgcucggacgugccGGcGGCGUcGGCGGcgCCGg -3'
miRNA:   3'- gUGGUUCGU---------------UCaCUGCA-UCGCCa-GGC- -5'
10741 5' -53.6 NC_002794.1 + 18689 0.67 0.960819
Target:  5'- cCGCCGucuccGGCAc--GGCGgcGGCGGUCCGg -3'
miRNA:   3'- -GUGGU-----UCGUucaCUGCa-UCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 19122 0.67 0.970435
Target:  5'- gACCgAGGCGGGUuaaGCGcGGUGGUCCu -3'
miRNA:   3'- gUGG-UUCGUUCAc--UGCaUCGCCAGGc -5'
10741 5' -53.6 NC_002794.1 + 31738 0.69 0.919765
Target:  5'- gACCGGGCGGGcGaACGaAGCGGUCg- -3'
miRNA:   3'- gUGGUUCGUUCaC-UGCaUCGCCAGgc -5'
10741 5' -53.6 NC_002794.1 + 32017 0.72 0.80158
Target:  5'- gACCAGGCAGGgGACGcGGCGcugCCGa -3'
miRNA:   3'- gUGGUUCGUUCaCUGCaUCGCca-GGC- -5'
10741 5' -53.6 NC_002794.1 + 37612 0.74 0.716211
Target:  5'- gCACCGAGaAGGUGACGUcGCGGaccCCGu -3'
miRNA:   3'- -GUGGUUCgUUCACUGCAuCGCCa--GGC- -5'
10741 5' -53.6 NC_002794.1 + 38947 0.67 0.970435
Target:  5'- aCGCCGGGCAGaucgucgccuacGUGACGUucauGCaGUUCGu -3'
miRNA:   3'- -GUGGUUCGUU------------CACUGCAu---CGcCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 41865 0.68 0.948809
Target:  5'- cCGCCGGGCAGGgccgGgcgcugccacgccACGUAGCGcUCCa -3'
miRNA:   3'- -GUGGUUCGUUCa---C-------------UGCAUCGCcAGGc -5'
10741 5' -53.6 NC_002794.1 + 42903 0.67 0.964236
Target:  5'- gCACU--GCAccUGACGUAGCgcugGGUCCGg -3'
miRNA:   3'- -GUGGuuCGUucACUGCAUCG----CCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 43609 0.69 0.92527
Target:  5'- gCACCAGGCAGcagGACGUGGCcG-CCa -3'
miRNA:   3'- -GUGGUUCGUUca-CUGCAUCGcCaGGc -5'
10741 5' -53.6 NC_002794.1 + 47741 0.66 0.984392
Target:  5'- cCGCCGGGUccacGUGGCGgccGUGGUCgCGg -3'
miRNA:   3'- -GUGGUUCGuu--CACUGCau-CGCCAG-GC- -5'
10741 5' -53.6 NC_002794.1 + 55171 0.66 0.980456
Target:  5'- gCGCCGAGCGGGcGACucgaggcGGCGGcCCu -3'
miRNA:   3'- -GUGGUUCGUUCaCUGca-----UCGCCaGGc -5'
10741 5' -53.6 NC_002794.1 + 55989 0.78 0.466783
Target:  5'- aGCCGcgGGCGAGcaccagcaUGACGUAGCGGUCgGa -3'
miRNA:   3'- gUGGU--UCGUUC--------ACUGCAUCGCCAGgC- -5'
10741 5' -53.6 NC_002794.1 + 65925 0.66 0.975824
Target:  5'- uCGCC-GGCGgcGGUGGCGUcggcGGCGGUaUCGu -3'
miRNA:   3'- -GUGGuUCGU--UCACUGCA----UCGCCA-GGC- -5'
10741 5' -53.6 NC_002794.1 + 68281 0.67 0.970145
Target:  5'- gCACCGGGCcAGccgGGCGUacgaacgccucguGGCGG-CCGa -3'
miRNA:   3'- -GUGGUUCGuUCa--CUGCA-------------UCGCCaGGC- -5'
10741 5' -53.6 NC_002794.1 + 70676 0.66 0.978231
Target:  5'- cCGCCGcGGC-GGUGACGUccugucgccgcuGGgGGUCCc -3'
miRNA:   3'- -GUGGU-UCGuUCACUGCA------------UCgCCAGGc -5'
10741 5' -53.6 NC_002794.1 + 80406 0.68 0.95332
Target:  5'- uCGCCGcGGCccAGGUGGCGccgGGCGGggCCGc -3'
miRNA:   3'- -GUGGU-UCG--UUCACUGCa--UCGCCa-GGC- -5'
10741 5' -53.6 NC_002794.1 + 86922 0.66 0.975824
Target:  5'- aCGCCcguGGCGGGcaGGCGgGGCGGgaUCCGg -3'
miRNA:   3'- -GUGGu--UCGUUCa-CUGCaUCGCC--AGGC- -5'
10741 5' -53.6 NC_002794.1 + 87089 0.66 0.974808
Target:  5'- gGCCGGGCGGGUGGgGgugcaggccgGGCGGgugggggugcaggCCGg -3'
miRNA:   3'- gUGGUUCGUUCACUgCa---------UCGCCa------------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.