Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10741 | 5' | -53.6 | NC_002794.1 | + | 87152 | 0.66 | 0.974808 |
Target: 5'- gGCCGGGCGGGUGGgGgugcaggccgGGCGGgugggggugcaggCCGg -3' miRNA: 3'- gUGGUUCGUUCACUgCa---------UCGCCa------------GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 87215 | 0.66 | 0.974808 |
Target: 5'- gGCCGGGCGGGUGGgGgugcaggccgGGCGGgugggggugcaggCCGg -3' miRNA: 3'- gUGGUUCGUUCACUgCa---------UCGCCa------------GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 87278 | 0.72 | 0.783452 |
Target: 5'- gGCCGGGCGGGUGgggguggggaaGCGggccuacccggUAGCGGUCCc -3' miRNA: 3'- gUGGUUCGUUCAC-----------UGC-----------AUCGCCAGGc -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 92274 | 0.67 | 0.964567 |
Target: 5'- gCGCCGGGCGAGgcgcgcaaggucggcGACGaGGCGGggCUGg -3' miRNA: 3'- -GUGGUUCGUUCa--------------CUGCaUCGCCa-GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 94197 | 0.73 | 0.75239 |
Target: 5'- gGCCAAGCGguugcgcuugugacGGUGGCGgcgacgGGCGGgcgggCCGg -3' miRNA: 3'- gUGGUUCGU--------------UCACUGCa-----UCGCCa----GGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 94864 | 0.66 | 0.982507 |
Target: 5'- aCGCU--GgAGGUGACGUuuacggAGCGGaUCCGg -3' miRNA: 3'- -GUGGuuCgUUCACUGCA------UCGCC-AGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 95561 | 0.68 | 0.949231 |
Target: 5'- aGCUggGCGAG-GACG-AGCGGcUCUa -3' miRNA: 3'- gUGGuuCGUUCaCUGCaUCGCC-AGGc -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 95828 | 0.68 | 0.94491 |
Target: 5'- gGCCGGGgGAGcGGCGgcGGCGG-CCGg -3' miRNA: 3'- gUGGUUCgUUCaCUGCa-UCGCCaGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 100353 | 0.66 | 0.984392 |
Target: 5'- cCGCCGAGCuggAGGUGgacuGCGaGGUGG-CCGa -3' miRNA: 3'- -GUGGUUCG---UUCAC----UGCaUCGCCaGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 115565 | 0.72 | 0.792588 |
Target: 5'- aGCCGAGCAgcucggcgaacGG-GACGUAGCGG-CUGc -3' miRNA: 3'- gUGGUUCGU-----------UCaCUGCAUCGCCaGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 116442 | 0.66 | 0.980456 |
Target: 5'- aCGCCGacgguGGCGA-UGACGaagAGCGG-CCGg -3' miRNA: 3'- -GUGGU-----UCGUUcACUGCa--UCGCCaGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 119952 | 0.66 | 0.978231 |
Target: 5'- gCGCC-AGCAGGUcGAgCGUgcucuGGUGGUUCGa -3' miRNA: 3'- -GUGGuUCGUUCA-CU-GCA-----UCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 122320 | 0.67 | 0.963904 |
Target: 5'- uCGCCGuGCGcGUGGCGUuggcccuGGCcGUCCGg -3' miRNA: 3'- -GUGGUuCGUuCACUGCA-------UCGcCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 124997 | 0.72 | 0.80158 |
Target: 5'- gCGCCAAGCGAcaccCGaAGCGGUCCGc -3' miRNA: 3'- -GUGGUUCGUUcacuGCaUCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 132595 | 0.66 | 0.978231 |
Target: 5'- uCACCGGGC--GUGACGUgguucAGCGGg-CGa -3' miRNA: 3'- -GUGGUUCGuuCACUGCA-----UCGCCagGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 133192 | 1.08 | 0.007767 |
Target: 5'- uCACCAAGCAAGUGACGUAGCGGUCCGc -3' miRNA: 3'- -GUGGUUCGUUCACUGCAUCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 137375 | 0.66 | 0.973227 |
Target: 5'- aGCCGGGCGAGcGcCGacGCGgGUCCGg -3' miRNA: 3'- gUGGUUCGUUCaCuGCauCGC-CAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 141739 | 0.66 | 0.980456 |
Target: 5'- aACCGuaCAAGuUGACGUacuuggacgAGCGGUUCGa -3' miRNA: 3'- gUGGUucGUUC-ACUGCA---------UCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 145922 | 0.73 | 0.764782 |
Target: 5'- gCGCCGAGCGgagGGgccGGCGagAGCGGUUCGg -3' miRNA: 3'- -GUGGUUCGU---UCa--CUGCa-UCGCCAGGC- -5' |
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10741 | 5' | -53.6 | NC_002794.1 | + | 153123 | 0.66 | 0.984392 |
Target: 5'- -uUCGGGUucGGUGGCGgcAGCGgGUCCGg -3' miRNA: 3'- guGGUUCGu-UCACUGCa-UCGC-CAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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