miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10741 5' -53.6 NC_002794.1 + 182336 0.67 0.96744
Target:  5'- gGgCGGGCGAGcgGACGggcgGGCGGgugaCCGg -3'
miRNA:   3'- gUgGUUCGUUCa-CUGCa---UCGCCa---GGC- -5'
10741 5' -53.6 NC_002794.1 + 182292 0.66 0.972957
Target:  5'- gACgGGGCGGGUGgacgggcagacggGCGgacgGGCGGUCgGg -3'
miRNA:   3'- gUGgUUCGUUCAC-------------UGCa---UCGCCAGgC- -5'
10741 5' -53.6 NC_002794.1 + 157997 0.66 0.978231
Target:  5'- gACCgGAGCcGGUGGgGUGGCGGaUCa- -3'
miRNA:   3'- gUGG-UUCGuUCACUgCAUCGCC-AGgc -5'
10741 5' -53.6 NC_002794.1 + 153123 0.66 0.984392
Target:  5'- -uUCGGGUucGGUGGCGgcAGCGgGUCCGg -3'
miRNA:   3'- guGGUUCGu-UCACUGCa-UCGC-CAGGC- -5'
10741 5' -53.6 NC_002794.1 + 145922 0.73 0.764782
Target:  5'- gCGCCGAGCGgagGGgccGGCGagAGCGGUUCGg -3'
miRNA:   3'- -GUGGUUCGU---UCa--CUGCa-UCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 141739 0.66 0.980456
Target:  5'- aACCGuaCAAGuUGACGUacuuggacgAGCGGUUCGa -3'
miRNA:   3'- gUGGUucGUUC-ACUGCA---------UCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 137375 0.66 0.973227
Target:  5'- aGCCGGGCGAGcGcCGacGCGgGUCCGg -3'
miRNA:   3'- gUGGUUCGUUCaCuGCauCGC-CAGGC- -5'
10741 5' -53.6 NC_002794.1 + 133192 1.08 0.007767
Target:  5'- uCACCAAGCAAGUGACGUAGCGGUCCGc -3'
miRNA:   3'- -GUGGUUCGUUCACUGCAUCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 132595 0.66 0.978231
Target:  5'- uCACCGGGC--GUGACGUgguucAGCGGg-CGa -3'
miRNA:   3'- -GUGGUUCGuuCACUGCA-----UCGCCagGC- -5'
10741 5' -53.6 NC_002794.1 + 124997 0.72 0.80158
Target:  5'- gCGCCAAGCGAcaccCGaAGCGGUCCGc -3'
miRNA:   3'- -GUGGUUCGUUcacuGCaUCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 122320 0.67 0.963904
Target:  5'- uCGCCGuGCGcGUGGCGUuggcccuGGCcGUCCGg -3'
miRNA:   3'- -GUGGUuCGUuCACUGCA-------UCGcCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 119952 0.66 0.978231
Target:  5'- gCGCC-AGCAGGUcGAgCGUgcucuGGUGGUUCGa -3'
miRNA:   3'- -GUGGuUCGUUCA-CU-GCA-----UCGCCAGGC- -5'
10741 5' -53.6 NC_002794.1 + 116442 0.66 0.980456
Target:  5'- aCGCCGacgguGGCGA-UGACGaagAGCGG-CCGg -3'
miRNA:   3'- -GUGGU-----UCGUUcACUGCa--UCGCCaGGC- -5'
10741 5' -53.6 NC_002794.1 + 115565 0.72 0.792588
Target:  5'- aGCCGAGCAgcucggcgaacGG-GACGUAGCGG-CUGc -3'
miRNA:   3'- gUGGUUCGU-----------UCaCUGCAUCGCCaGGC- -5'
10741 5' -53.6 NC_002794.1 + 100353 0.66 0.984392
Target:  5'- cCGCCGAGCuggAGGUGgacuGCGaGGUGG-CCGa -3'
miRNA:   3'- -GUGGUUCG---UUCAC----UGCaUCGCCaGGC- -5'
10741 5' -53.6 NC_002794.1 + 95828 0.68 0.94491
Target:  5'- gGCCGGGgGAGcGGCGgcGGCGG-CCGg -3'
miRNA:   3'- gUGGUUCgUUCaCUGCa-UCGCCaGGC- -5'
10741 5' -53.6 NC_002794.1 + 95561 0.68 0.949231
Target:  5'- aGCUggGCGAG-GACG-AGCGGcUCUa -3'
miRNA:   3'- gUGGuuCGUUCaCUGCaUCGCC-AGGc -5'
10741 5' -53.6 NC_002794.1 + 94864 0.66 0.982507
Target:  5'- aCGCU--GgAGGUGACGUuuacggAGCGGaUCCGg -3'
miRNA:   3'- -GUGGuuCgUUCACUGCA------UCGCC-AGGC- -5'
10741 5' -53.6 NC_002794.1 + 94197 0.73 0.75239
Target:  5'- gGCCAAGCGguugcgcuugugacGGUGGCGgcgacgGGCGGgcgggCCGg -3'
miRNA:   3'- gUGGUUCGU--------------UCACUGCa-----UCGCCa----GGC- -5'
10741 5' -53.6 NC_002794.1 + 92274 0.67 0.964567
Target:  5'- gCGCCGGGCGAGgcgcgcaaggucggcGACGaGGCGGggCUGg -3'
miRNA:   3'- -GUGGUUCGUUCa--------------CUGCaUCGCCa-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.