miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10742 3' -57 NC_002794.1 + 188792 0.66 0.920742
Target:  5'- aGCgGCCGGcccCGCCGAGCGc-CGUc- -3'
miRNA:   3'- cUGgUGGCCa--GCGGCUCGCauGCAau -5'
10742 3' -57 NC_002794.1 + 192680 0.66 0.920742
Target:  5'- --gCGCCGGcCGCCGu-CGUACGUc- -3'
miRNA:   3'- cugGUGGCCaGCGGCucGCAUGCAau -5'
10742 3' -57 NC_002794.1 + 141437 0.66 0.920742
Target:  5'- gGGgCGCCGGgggCGCCGggAGCGgcgcgGCGUc- -3'
miRNA:   3'- -CUgGUGGCCa--GCGGC--UCGCa----UGCAau -5'
10742 3' -57 NC_002794.1 + 65767 0.66 0.920742
Target:  5'- cGCCGCCcguGGUgggGCCGAGCGgaucacacgagGCGUUGa -3'
miRNA:   3'- cUGGUGG---CCAg--CGGCUCGCa----------UGCAAU- -5'
10742 3' -57 NC_002794.1 + 21991 0.66 0.915168
Target:  5'- cGACCcgucGCCGGcaaGCCGgccaaGGCGUGCGa-- -3'
miRNA:   3'- -CUGG----UGGCCag-CGGC-----UCGCAUGCaau -5'
10742 3' -57 NC_002794.1 + 67214 0.66 0.915168
Target:  5'- gGugCGCuCGG-CGCCGGGCGgcuaaccGCGUc- -3'
miRNA:   3'- -CugGUG-GCCaGCGGCUCGCa------UGCAau -5'
10742 3' -57 NC_002794.1 + 98353 0.66 0.915168
Target:  5'- cGACCgGCCGaUCGCCGcGCGgcugGCGggAg -3'
miRNA:   3'- -CUGG-UGGCcAGCGGCuCGCa---UGCaaU- -5'
10742 3' -57 NC_002794.1 + 191503 0.66 0.915168
Target:  5'- cGCCACCGaGaggugccagCGCCGGGCGU-CGg-- -3'
miRNA:   3'- cUGGUGGC-Ca--------GCGGCUCGCAuGCaau -5'
10742 3' -57 NC_002794.1 + 72057 0.66 0.915168
Target:  5'- uGACCcgcaGCCGGUUGCCc-GCGUGCc--- -3'
miRNA:   3'- -CUGG----UGGCCAGCGGcuCGCAUGcaau -5'
10742 3' -57 NC_002794.1 + 186957 0.66 0.915168
Target:  5'- gGGCCGCUGGcCGCCGccuccagcAGCGcGCGc-- -3'
miRNA:   3'- -CUGGUGGCCaGCGGC--------UCGCaUGCaau -5'
10742 3' -57 NC_002794.1 + 117465 0.66 0.909366
Target:  5'- cGCCG-CGGUCGUCG-GCGUACu--- -3'
miRNA:   3'- cUGGUgGCCAGCGGCuCGCAUGcaau -5'
10742 3' -57 NC_002794.1 + 191658 0.66 0.909366
Target:  5'- -cCCGCCGGgggacggCGCCGgcagcGGCGgcgGCGUg- -3'
miRNA:   3'- cuGGUGGCCa------GCGGC-----UCGCa--UGCAau -5'
10742 3' -57 NC_002794.1 + 63130 0.66 0.909366
Target:  5'- aACUACCGcuUCGCCGAccGCGUGCa--- -3'
miRNA:   3'- cUGGUGGCc-AGCGGCU--CGCAUGcaau -5'
10742 3' -57 NC_002794.1 + 47974 0.66 0.908774
Target:  5'- cGACCGCCGcG-CGCuccuccgacccgaCGAGCGUGCa--- -3'
miRNA:   3'- -CUGGUGGC-CaGCG-------------GCUCGCAUGcaau -5'
10742 3' -57 NC_002794.1 + 66733 0.66 0.90334
Target:  5'- cACCGCCGGcgguggCGgCGGcGCGUACGa-- -3'
miRNA:   3'- cUGGUGGCCa-----GCgGCU-CGCAUGCaau -5'
10742 3' -57 NC_002794.1 + 65910 0.66 0.90334
Target:  5'- cGACCuugACCGucGUCGCCGgcGGCGgugGCGUc- -3'
miRNA:   3'- -CUGG---UGGC--CAGCGGC--UCGCa--UGCAau -5'
10742 3' -57 NC_002794.1 + 10860 0.66 0.90334
Target:  5'- cGACCcUCGGaaGCCGAGCGUgaccgACGa-- -3'
miRNA:   3'- -CUGGuGGCCagCGGCUCGCA-----UGCaau -5'
10742 3' -57 NC_002794.1 + 179102 0.66 0.90334
Target:  5'- aACCGuCCGGUCGuccgcgguCCGGGCGcGCGg-- -3'
miRNA:   3'- cUGGU-GGCCAGC--------GGCUCGCaUGCaau -5'
10742 3' -57 NC_002794.1 + 77955 0.66 0.897091
Target:  5'- cGAUCGCCGccGUCGCCGAGCcgACu--- -3'
miRNA:   3'- -CUGGUGGC--CAGCGGCUCGcaUGcaau -5'
10742 3' -57 NC_002794.1 + 55150 0.67 0.891278
Target:  5'- --gCACCGGgagacacgagucgagCGCCGAGCGgGCGa-- -3'
miRNA:   3'- cugGUGGCCa--------------GCGGCUCGCaUGCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.