miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10742 5' -57.4 NC_002794.1 + 125756 0.66 0.901151
Target:  5'- gACGGCGgcCGGCGGcucgccACCCGGCu- -3'
miRNA:   3'- aUGCUGCa-GCCGCUauc---UGGGCCGuu -5'
10742 5' -57.4 NC_002794.1 + 141457 0.66 0.901151
Target:  5'- aGCGGCG-CGGCGuccGGACU-GGCGAg -3'
miRNA:   3'- aUGCUGCaGCCGCua-UCUGGgCCGUU- -5'
10742 5' -57.4 NC_002794.1 + 118275 0.66 0.901151
Target:  5'- gGCGGCGcCGGCGucggGGACCgcgccgGGCGc -3'
miRNA:   3'- aUGCUGCaGCCGCua--UCUGGg-----CCGUu -5'
10742 5' -57.4 NC_002794.1 + 12718 0.66 0.894787
Target:  5'- cUGCG-CGUuccgCGGCGAcgaGGGCCCGGUc- -3'
miRNA:   3'- -AUGCuGCA----GCCGCUa--UCUGGGCCGuu -5'
10742 5' -57.4 NC_002794.1 + 160909 0.66 0.894787
Target:  5'- gUACGACuccuaaugccugGUUGGCGAUcGGCCCaGGUGGa -3'
miRNA:   3'- -AUGCUG------------CAGCCGCUAuCUGGG-CCGUU- -5'
10742 5' -57.4 NC_002794.1 + 142212 0.66 0.894787
Target:  5'- gGCGGCGgcagCGGCGGUgcgGGGagCGGCGGa -3'
miRNA:   3'- aUGCUGCa---GCCGCUA---UCUggGCCGUU- -5'
10742 5' -57.4 NC_002794.1 + 32918 0.66 0.894787
Target:  5'- gGCGGCagcagGUCGGCGGgaagcGCUCGGCGg -3'
miRNA:   3'- aUGCUG-----CAGCCGCUauc--UGGGCCGUu -5'
10742 5' -57.4 NC_002794.1 + 37884 0.66 0.894787
Target:  5'- gGCGGCGggGGCGGUGGcggCGGCAGc -3'
miRNA:   3'- aUGCUGCagCCGCUAUCuggGCCGUU- -5'
10742 5' -57.4 NC_002794.1 + 112348 0.66 0.894139
Target:  5'- gGCGGCGccggCGGCGGggcggggagcugcUGGaACUCGGCAc -3'
miRNA:   3'- aUGCUGCa---GCCGCU-------------AUC-UGGGCCGUu -5'
10742 5' -57.4 NC_002794.1 + 120046 0.66 0.890862
Target:  5'- cAUGACGgCGGCGGUGgcggccgcggaggccGACgCGGCGGu -3'
miRNA:   3'- aUGCUGCaGCCGCUAU---------------CUGgGCCGUU- -5'
10742 5' -57.4 NC_002794.1 + 92099 0.66 0.888202
Target:  5'- gACGGCcuUCGuGCGGauucAGACCCGGCu- -3'
miRNA:   3'- aUGCUGc-AGC-CGCUa---UCUGGGCCGuu -5'
10742 5' -57.4 NC_002794.1 + 53634 0.66 0.888202
Target:  5'- gACGAgGUCGGCc---GAgCCGGCGu -3'
miRNA:   3'- aUGCUgCAGCCGcuauCUgGGCCGUu -5'
10742 5' -57.4 NC_002794.1 + 49600 0.66 0.888202
Target:  5'- cGCGA--UCGGCGAcggcGGGCgCCGGCGg -3'
miRNA:   3'- aUGCUgcAGCCGCUa---UCUG-GGCCGUu -5'
10742 5' -57.4 NC_002794.1 + 109100 0.66 0.888202
Target:  5'- -gUGACGuguuUCGGCGGUuucGGugCCGGUg- -3'
miRNA:   3'- auGCUGC----AGCCGCUA---UCugGGCCGuu -5'
10742 5' -57.4 NC_002794.1 + 188290 0.66 0.888202
Target:  5'- cAgGGCGcCGcGCGccGGACCCGGCc- -3'
miRNA:   3'- aUgCUGCaGC-CGCuaUCUGGGCCGuu -5'
10742 5' -57.4 NC_002794.1 + 116933 0.66 0.888202
Target:  5'- gGCGuCGUCGGCGuc---CCCGGCn- -3'
miRNA:   3'- aUGCuGCAGCCGCuaucuGGGCCGuu -5'
10742 5' -57.4 NC_002794.1 + 190999 0.66 0.887531
Target:  5'- gACGGCGUC-GCGAUcGGCCguucgauCGGCAc -3'
miRNA:   3'- aUGCUGCAGcCGCUAuCUGG-------GCCGUu -5'
10742 5' -57.4 NC_002794.1 + 37747 0.66 0.881398
Target:  5'- -cCGGCGgCGGCGcgGcGGCgCCGGCGGg -3'
miRNA:   3'- auGCUGCaGCCGCuaU-CUG-GGCCGUU- -5'
10742 5' -57.4 NC_002794.1 + 141313 0.66 0.881398
Target:  5'- gGCGACGgcacCGGCGuc-GGCUCGGUg- -3'
miRNA:   3'- aUGCUGCa---GCCGCuauCUGGGCCGuu -5'
10742 5' -57.4 NC_002794.1 + 109168 0.66 0.881398
Target:  5'- gGCGACGagCGGCGGUAG---CGGCGGa -3'
miRNA:   3'- aUGCUGCa-GCCGCUAUCuggGCCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.