miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10743 3' -54.9 NC_002794.1 + 129144 0.66 0.976635
Target:  5'- gCGUCgagacuguGUCGCGGcCCUCGCggccgauggCCGUucGAUCGg -3'
miRNA:   3'- -GCAG--------UAGUGCU-GGAGCG---------GGCA--CUAGC- -5'
10743 3' -54.9 NC_002794.1 + 37780 0.66 0.976635
Target:  5'- cCGUCGUCGuCGGCCgcaggCGCCuCGacgagacGGUCGc -3'
miRNA:   3'- -GCAGUAGU-GCUGGa----GCGG-GCa------CUAGC- -5'
10743 3' -54.9 NC_002794.1 + 37926 0.66 0.976635
Target:  5'- aCGUCAaccgcCGCGGCC--GCCCGUGccUCGg -3'
miRNA:   3'- -GCAGUa----GUGCUGGagCGGGCACu-AGC- -5'
10743 3' -54.9 NC_002794.1 + 146279 0.66 0.968664
Target:  5'- uCGUCGUCGuCGACCUCGUC----GUCGc -3'
miRNA:   3'- -GCAGUAGU-GCUGGAGCGGgcacUAGC- -5'
10743 3' -54.9 NC_002794.1 + 13584 0.66 0.968664
Target:  5'- gGUCAacggCACGACCgUCGUCCGggGAg-- -3'
miRNA:   3'- gCAGUa---GUGCUGG-AGCGGGCa-CUagc -5'
10743 3' -54.9 NC_002794.1 + 65898 0.66 0.968664
Target:  5'- uCGUCgcGUCgACGACCUUGaCCGUcGUCGc -3'
miRNA:   3'- -GCAG--UAG-UGCUGGAGCgGGCAcUAGC- -5'
10743 3' -54.9 NC_002794.1 + 126621 0.66 0.968664
Target:  5'- aCGUCGcggcgugagCGCGACCgggCGCCCG-GAcgCGc -3'
miRNA:   3'- -GCAGUa--------GUGCUGGa--GCGGGCaCUa-GC- -5'
10743 3' -54.9 NC_002794.1 + 12447 0.66 0.965622
Target:  5'- gCGUCAgcgcccgccUCACGuACCU-GCCCGacgaccgucUGAUCGu -3'
miRNA:   3'- -GCAGU---------AGUGC-UGGAgCGGGC---------ACUAGC- -5'
10743 3' -54.9 NC_002794.1 + 123857 0.66 0.965622
Target:  5'- gCGUCAgcCACGugCUCGCCgagCG-GGUCc -3'
miRNA:   3'- -GCAGUa-GUGCugGAGCGG---GCaCUAGc -5'
10743 3' -54.9 NC_002794.1 + 187582 0.66 0.965622
Target:  5'- cCGUCggCGCGGCCgccgucgcgaCGCCCGgcGUCGc -3'
miRNA:   3'- -GCAGuaGUGCUGGa---------GCGGGCacUAGC- -5'
10743 3' -54.9 NC_002794.1 + 145610 0.66 0.965622
Target:  5'- aGUCGggCGCGACgaggagCUCgGCCCGgaGAUCGg -3'
miRNA:   3'- gCAGUa-GUGCUG------GAG-CGGGCa-CUAGC- -5'
10743 3' -54.9 NC_002794.1 + 18818 0.67 0.962377
Target:  5'- gGUCG--GCGACCUCGgCCG-GcgCGg -3'
miRNA:   3'- gCAGUagUGCUGGAGCgGGCaCuaGC- -5'
10743 3' -54.9 NC_002794.1 + 49699 0.67 0.958926
Target:  5'- gCGUCggCACGACgaCUCGCcCCGggcaGUCGa -3'
miRNA:   3'- -GCAGuaGUGCUG--GAGCG-GGCac--UAGC- -5'
10743 3' -54.9 NC_002794.1 + 44546 0.67 0.958926
Target:  5'- uCGUCGUCgccgGCGGCggCGCCCGuUGAcgUCa -3'
miRNA:   3'- -GCAGUAG----UGCUGgaGCGGGC-ACU--AGc -5'
10743 3' -54.9 NC_002794.1 + 121906 0.67 0.955263
Target:  5'- gCGUCGaCugGACgUCGCCCGccg-CGg -3'
miRNA:   3'- -GCAGUaGugCUGgAGCGGGCacuaGC- -5'
10743 3' -54.9 NC_002794.1 + 133384 0.67 0.951385
Target:  5'- uCGUCcggcgGUCAUGAUCg-GCCCGggGGUCGa -3'
miRNA:   3'- -GCAG-----UAGUGCUGGagCGGGCa-CUAGC- -5'
10743 3' -54.9 NC_002794.1 + 131638 0.67 0.947288
Target:  5'- gCGUCGUCGCGcccguucucaACgCUCuGCCUGUGAcCGc -3'
miRNA:   3'- -GCAGUAGUGC----------UG-GAG-CGGGCACUaGC- -5'
10743 3' -54.9 NC_002794.1 + 107243 0.67 0.947288
Target:  5'- gCGgCGUCGCgGACCUgGCCCGgcgGAgccgCGc -3'
miRNA:   3'- -GCaGUAGUG-CUGGAgCGGGCa--CUa---GC- -5'
10743 3' -54.9 NC_002794.1 + 188683 0.67 0.94297
Target:  5'- uCGUCGgccaCGCGGuacagCUCGCCCGUGcgCa -3'
miRNA:   3'- -GCAGUa---GUGCUg----GAGCGGGCACuaGc -5'
10743 3' -54.9 NC_002794.1 + 134315 0.68 0.927122
Target:  5'- uGUCGccucgcgccggaucUCcCGACCuUCGCCCG-GAUCa -3'
miRNA:   3'- gCAGU--------------AGuGCUGG-AGCGGGCaCUAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.