miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10743 5' -60.3 NC_002794.1 + 111911 0.66 0.836361
Target:  5'- gCCGuuUCGUCGagaGGCuCUCGUCCG-GGa -3'
miRNA:   3'- gGGC--AGUAGUg--CCG-GAGCGGGCaCCa -5'
10743 5' -60.3 NC_002794.1 + 151004 0.66 0.828497
Target:  5'- gCCCG-CuUCAacuuCGaGUgCUCGCCCGUGGUc -3'
miRNA:   3'- -GGGCaGuAGU----GC-CG-GAGCGGGCACCA- -5'
10743 5' -60.3 NC_002794.1 + 187067 0.66 0.820474
Target:  5'- gCCCGcCAggugcCGCaGGCugCUCGCCaCGUGGa -3'
miRNA:   3'- -GGGCaGUa----GUG-CCG--GAGCGG-GCACCa -5'
10743 5' -60.3 NC_002794.1 + 107243 0.66 0.820474
Target:  5'- -gCGgCGUCGCGGaCCUgGCCCGgcGGa -3'
miRNA:   3'- ggGCaGUAGUGCC-GGAgCGGGCa-CCa -5'
10743 5' -60.3 NC_002794.1 + 76299 0.66 0.820474
Target:  5'- cCCCGagCGUCugGGCC-CGCgCCGg--- -3'
miRNA:   3'- -GGGCa-GUAGugCCGGaGCG-GGCacca -5'
10743 5' -60.3 NC_002794.1 + 191159 0.66 0.815587
Target:  5'- cCUCGUCGUacCACGGCgaggucaucgucgcgCUCGCCCGg--- -3'
miRNA:   3'- -GGGCAGUA--GUGCCG---------------GAGCGGGCacca -5'
10743 5' -60.3 NC_002794.1 + 21885 0.66 0.812298
Target:  5'- gCCG-CGgggugucCGCGGCCUgCGUCgGUGGUg -3'
miRNA:   3'- gGGCaGUa------GUGCCGGA-GCGGgCACCA- -5'
10743 5' -60.3 NC_002794.1 + 153352 0.66 0.812298
Target:  5'- gUUGUCAggaCGCGGCCcggcugcgCGCCCucGUGGUc -3'
miRNA:   3'- gGGCAGUa--GUGCCGGa-------GCGGG--CACCA- -5'
10743 5' -60.3 NC_002794.1 + 111082 0.66 0.812298
Target:  5'- cCCCGUCggCAgGGUCggcggGCCCGgcgGGa -3'
miRNA:   3'- -GGGCAGuaGUgCCGGag---CGGGCa--CCa -5'
10743 5' -60.3 NC_002794.1 + 189993 0.66 0.812298
Target:  5'- gUCCGUCcggGUCcauCGGCC-CGUCCG-GGUc -3'
miRNA:   3'- -GGGCAG---UAGu--GCCGGaGCGGGCaCCA- -5'
10743 5' -60.3 NC_002794.1 + 116204 0.66 0.812298
Target:  5'- gUCGaUgAUCACGGCCUCGgCCGcgcGGc -3'
miRNA:   3'- gGGC-AgUAGUGCCGGAGCgGGCa--CCa -5'
10743 5' -60.3 NC_002794.1 + 30382 0.66 0.803977
Target:  5'- -gCGaUCGUCAUGGCCgccCGCgacgugaugCCGUGGUc -3'
miRNA:   3'- ggGC-AGUAGUGCCGGa--GCG---------GGCACCA- -5'
10743 5' -60.3 NC_002794.1 + 88978 0.66 0.803977
Target:  5'- gCCGgaUCGUCGCGGCagaUCGCgaauaucgaCGUGGa -3'
miRNA:   3'- gGGC--AGUAGUGCCGg--AGCGg--------GCACCa -5'
10743 5' -60.3 NC_002794.1 + 116996 0.66 0.803977
Target:  5'- gCCGUC--CGCGGCguCUCGCCCa-GGUa -3'
miRNA:   3'- gGGCAGuaGUGCCG--GAGCGGGcaCCA- -5'
10743 5' -60.3 NC_002794.1 + 194182 0.66 0.803977
Target:  5'- cUCCGUCcgCACGuuCacCGCCgCGUGGUa -3'
miRNA:   3'- -GGGCAGuaGUGCcgGa-GCGG-GCACCA- -5'
10743 5' -60.3 NC_002794.1 + 137065 0.66 0.803977
Target:  5'- gCCCGUCGgcgggcucuUCGCGcGCCaugUCGCCCGc--- -3'
miRNA:   3'- -GGGCAGU---------AGUGC-CGG---AGCGGGCacca -5'
10743 5' -60.3 NC_002794.1 + 96744 0.66 0.795517
Target:  5'- gCCGgcgCGUCucgcaaGCGGCCggcggucgagUCGCCCGgGGUc -3'
miRNA:   3'- gGGCa--GUAG------UGCCGG----------AGCGGGCaCCA- -5'
10743 5' -60.3 NC_002794.1 + 193125 0.66 0.795517
Target:  5'- aCCGUCGUCgGCGGCagcuccucgUGCCCGUa-- -3'
miRNA:   3'- gGGCAGUAG-UGCCGga-------GCGGGCAcca -5'
10743 5' -60.3 NC_002794.1 + 90218 0.66 0.795517
Target:  5'- gCCCG-CcgCGCcggaGCCcCGCCUGUGGUc -3'
miRNA:   3'- -GGGCaGuaGUGc---CGGaGCGGGCACCA- -5'
10743 5' -60.3 NC_002794.1 + 60285 0.66 0.795517
Target:  5'- aCCGUCAacccCugGGCCUCGCagaagggcUCGcUGGg -3'
miRNA:   3'- gGGCAGUa---GugCCGGAGCG--------GGC-ACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.