miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10744 3' -58.4 NC_002794.1 + 50812 0.66 0.853437
Target:  5'- -cGUCGGGCgcuccGGCGCcc-CCGCCcucgggcgucgcGAUCa -3'
miRNA:   3'- uuCAGCCCG-----UCGCGauaGGCGG------------CUAG- -5'
10744 3' -58.4 NC_002794.1 + 119505 0.66 0.845654
Target:  5'- gGGGUCGucGGCGGCGCggagccggCCGCgGAc- -3'
miRNA:   3'- -UUCAGC--CCGUCGCGaua-----GGCGgCUag -5'
10744 3' -58.4 NC_002794.1 + 157943 0.66 0.845654
Target:  5'- uAAGcCGGGUAccGUGUUGUCCGuCCGGa- -3'
miRNA:   3'- -UUCaGCCCGU--CGCGAUAGGC-GGCUag -5'
10744 3' -58.4 NC_002794.1 + 31331 0.66 0.844865
Target:  5'- -cGUCGGcuCGGCGCccgccgUGUCCGCCGcccgcucGUCg -3'
miRNA:   3'- uuCAGCCc-GUCGCG------AUAGGCGGC-------UAG- -5'
10744 3' -58.4 NC_002794.1 + 100589 0.66 0.837684
Target:  5'- --cUCGGGCcGUGCg---CGCCGAUCc -3'
miRNA:   3'- uucAGCCCGuCGCGauagGCGGCUAG- -5'
10744 3' -58.4 NC_002794.1 + 72025 0.66 0.836877
Target:  5'- gAGGUCGcGCAGCcgcuugaGCUGUUCGCCGc-- -3'
miRNA:   3'- -UUCAGCcCGUCG-------CGAUAGGCGGCuag -5'
10744 3' -58.4 NC_002794.1 + 33297 0.66 0.829534
Target:  5'- gGAGUaucugcggcucUGGGCGGCGUccAUCCGCCa--- -3'
miRNA:   3'- -UUCA-----------GCCCGUCGCGa-UAGGCGGcuag -5'
10744 3' -58.4 NC_002794.1 + 67205 0.66 0.812723
Target:  5'- -cGUcCGGGCGGUGCgcUCggCGCCGggCg -3'
miRNA:   3'- uuCA-GCCCGUCGCGauAG--GCGGCuaG- -5'
10744 3' -58.4 NC_002794.1 + 179242 0.66 0.812723
Target:  5'- cAGGUCGGcGuCGGCGagaccgCCGCCGAg- -3'
miRNA:   3'- -UUCAGCC-C-GUCGCgaua--GGCGGCUag -5'
10744 3' -58.4 NC_002794.1 + 126260 0.66 0.812723
Target:  5'- gAGGUCGGcggcuggcugGCGGCGCUgggcuugcuGUgCGCCGcgCg -3'
miRNA:   3'- -UUCAGCC----------CGUCGCGA---------UAgGCGGCuaG- -5'
10744 3' -58.4 NC_002794.1 + 104256 0.66 0.812723
Target:  5'- uGAGcUCGGGCAGcCGC--UCgGCCGGc- -3'
miRNA:   3'- -UUC-AGCCCGUC-GCGauAGgCGGCUag -5'
10744 3' -58.4 NC_002794.1 + 105494 0.67 0.804077
Target:  5'- cGGUCGuGG-AGcCGCcg-CCGCCGGUCg -3'
miRNA:   3'- uUCAGC-CCgUC-GCGauaGGCGGCUAG- -5'
10744 3' -58.4 NC_002794.1 + 90943 0.67 0.79528
Target:  5'- ---gUGGGCGG-GCUGUgCGCCGAg- -3'
miRNA:   3'- uucaGCCCGUCgCGAUAgGCGGCUag -5'
10744 3' -58.4 NC_002794.1 + 30687 0.67 0.79528
Target:  5'- -cGUCcGGCGGaCGUgcacguUCCGCCGGUUg -3'
miRNA:   3'- uuCAGcCCGUC-GCGau----AGGCGGCUAG- -5'
10744 3' -58.4 NC_002794.1 + 80424 0.67 0.786342
Target:  5'- -cGcCGGGCGGgGCcg-CCGCCGGc- -3'
miRNA:   3'- uuCaGCCCGUCgCGauaGGCGGCUag -5'
10744 3' -58.4 NC_002794.1 + 149981 0.67 0.77727
Target:  5'- cGGaCcGGCGGcCGCUAUCUGCCGcgCu -3'
miRNA:   3'- uUCaGcCCGUC-GCGAUAGGCGGCuaG- -5'
10744 3' -58.4 NC_002794.1 + 19450 0.67 0.771766
Target:  5'- cGAG-CGGGCacgagcggcggcggcGGCGggAcCCGCCGGUCg -3'
miRNA:   3'- -UUCaGCCCG---------------UCGCgaUaGGCGGCUAG- -5'
10744 3' -58.4 NC_002794.1 + 119767 0.67 0.768072
Target:  5'- cAGGUCGcGGCcggccuccaGGCgGCUccgGUCCGCCGAc- -3'
miRNA:   3'- -UUCAGC-CCG---------UCG-CGA---UAGGCGGCUag -5'
10744 3' -58.4 NC_002794.1 + 16234 0.67 0.768072
Target:  5'- cAGGUCGGGCuGGCaCguccCCGCCGAg- -3'
miRNA:   3'- -UUCAGCCCG-UCGcGaua-GGCGGCUag -5'
10744 3' -58.4 NC_002794.1 + 65232 0.67 0.768072
Target:  5'- ---aCGGGCGGCGgUcgCCGCggcggCGAUCc -3'
miRNA:   3'- uucaGCCCGUCGCgAuaGGCG-----GCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.