miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10744 5' -60 NC_002794.1 + 49411 0.66 0.829931
Target:  5'- -cGGCGGccg-CGGCGgCGgCGGCCg -3'
miRNA:   3'- aaCUGCCacaaGCCGCaGCgGCCGGg -5'
10744 5' -60 NC_002794.1 + 67210 0.66 0.829931
Target:  5'- -gGGCGGUGcgcUCGGCGcCgGgCGGCUa -3'
miRNA:   3'- aaCUGCCACa--AGCCGCaG-CgGCCGGg -5'
10744 5' -60 NC_002794.1 + 138398 0.66 0.821847
Target:  5'- -aGAaGGcGUcgaGGuCGUCGCCGGCCg -3'
miRNA:   3'- aaCUgCCaCAag-CC-GCAGCGGCCGGg -5'
10744 5' -60 NC_002794.1 + 178103 0.66 0.821847
Target:  5'- -gGuACGGUG-UCGGgGU-GCCGGUCg -3'
miRNA:   3'- aaC-UGCCACaAGCCgCAgCGGCCGGg -5'
10744 5' -60 NC_002794.1 + 145583 0.66 0.821847
Target:  5'- -cGACGGag--CGGCG--GCCGGCUCc -3'
miRNA:   3'- aaCUGCCacaaGCCGCagCGGCCGGG- -5'
10744 5' -60 NC_002794.1 + 145728 0.66 0.821847
Target:  5'- -gGGCGcUGgaggCGGCGgCGCCGGCa- -3'
miRNA:   3'- aaCUGCcACaa--GCCGCaGCGGCCGgg -5'
10744 5' -60 NC_002794.1 + 181665 0.66 0.819391
Target:  5'- --cGCGGUGUacacgUUGGUGUgCGCggaccgccgcgccuCGGCCCa -3'
miRNA:   3'- aacUGCCACA-----AGCCGCA-GCG--------------GCCGGG- -5'
10744 5' -60 NC_002794.1 + 103213 0.66 0.813606
Target:  5'- cUUGACGGUGgaCGGgaCGaggCGCUGGCa- -3'
miRNA:   3'- -AACUGCCACaaGCC--GCa--GCGGCCGgg -5'
10744 5' -60 NC_002794.1 + 66553 0.66 0.813606
Target:  5'- -cGGCGGauaGUaauaCGGUaUCGCCGGCgCCg -3'
miRNA:   3'- aaCUGCCa--CAa---GCCGcAGCGGCCG-GG- -5'
10744 5' -60 NC_002794.1 + 144977 0.66 0.813606
Target:  5'- -cGACGGUGUcgCgaccggcgccgGGCGUcCGCCuGGCgCa -3'
miRNA:   3'- aaCUGCCACAa-G-----------CCGCA-GCGG-CCGgG- -5'
10744 5' -60 NC_002794.1 + 114711 0.66 0.813606
Target:  5'- -aGACGGacggCGGCGgCGgCGGCuCCg -3'
miRNA:   3'- aaCUGCCacaaGCCGCaGCgGCCG-GG- -5'
10744 5' -60 NC_002794.1 + 84156 0.66 0.813606
Target:  5'- -cGACGGcgccuccucUCGGCccagCGCuCGGCCCg -3'
miRNA:   3'- aaCUGCCaca------AGCCGca--GCG-GCCGGG- -5'
10744 5' -60 NC_002794.1 + 70223 0.66 0.813606
Target:  5'- -gGACGGUcGggCgGGCG--GCCGGCCg -3'
miRNA:   3'- aaCUGCCA-CaaG-CCGCagCGGCCGGg -5'
10744 5' -60 NC_002794.1 + 99810 0.66 0.813606
Target:  5'- --cGCGGgcgcCGGCGcCGUCGGCCg -3'
miRNA:   3'- aacUGCCacaaGCCGCaGCGGCCGGg -5'
10744 5' -60 NC_002794.1 + 147984 0.66 0.813606
Target:  5'- gUGGCGGUGUcccugcuggccuUCGucCG-CGUCGGCCUc -3'
miRNA:   3'- aACUGCCACA------------AGCc-GCaGCGGCCGGG- -5'
10744 5' -60 NC_002794.1 + 107528 0.66 0.813606
Target:  5'- -cGACGGc---CGGCGcggCGCCGGCg- -3'
miRNA:   3'- aaCUGCCacaaGCCGCa--GCGGCCGgg -5'
10744 5' -60 NC_002794.1 + 101589 0.66 0.805215
Target:  5'- --cGCGGccgGgggGGCGggUGCCGGCCCg -3'
miRNA:   3'- aacUGCCa--CaagCCGCa-GCGGCCGGG- -5'
10744 5' -60 NC_002794.1 + 52886 0.66 0.805215
Target:  5'- -cGAUGGUGgggucgaacgCGGCGcCGCC-GCCg -3'
miRNA:   3'- aaCUGCCACaa--------GCCGCaGCGGcCGGg -5'
10744 5' -60 NC_002794.1 + 56126 0.66 0.800112
Target:  5'- aUGACGGUgaacugcagcgugucGUaCGGCGUgcCGCagcggcagCGGCCCc -3'
miRNA:   3'- aACUGCCA---------------CAaGCCGCA--GCG--------GCCGGG- -5'
10744 5' -60 NC_002794.1 + 106980 0.66 0.796682
Target:  5'- -cGGCGGccgGcaCGGCGguggcggCGCUGGCCg -3'
miRNA:   3'- aaCUGCCa--CaaGCCGCa------GCGGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.