miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10745 3' -53.1 NC_002794.1 + 12717 0.66 0.991387
Target:  5'- gCUGCG-CGU-UCCGCGGcGAcGAGGGc -3'
miRNA:   3'- -GGCGCaGUAgAGGCGCCuUUuCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 89290 0.66 0.991273
Target:  5'- aUCGUGUCGcUCUCCGUccgaucucGGAAAAcggucgagagaacGGGGAc -3'
miRNA:   3'- -GGCGCAGU-AGAGGCG--------CCUUUU-------------CUCCU- -5'
10745 3' -53.1 NC_002794.1 + 148009 0.66 0.988886
Target:  5'- uCCGCGUCGgcCUCgGuCGGuuGAucGGGGAu -3'
miRNA:   3'- -GGCGCAGUa-GAGgC-GCC--UUuuCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 38701 0.66 0.987441
Target:  5'- gCCGCGcCGUCgagcgccccggCCGCcGAAAuGGGGAc -3'
miRNA:   3'- -GGCGCaGUAGa----------GGCGcCUUUuCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 89517 0.66 0.987289
Target:  5'- aCCGCGUaggccaGagUCgGCGGAGGcagcagacgcgacGGAGGAg -3'
miRNA:   3'- -GGCGCAg-----UagAGgCGCCUUU-------------UCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 49767 0.67 0.98412
Target:  5'- aCGCGcUCGUCUCCcCGGAGgcGGuuGGGc -3'
miRNA:   3'- gGCGC-AGUAGAGGcGCCUUuuCU--CCU- -5'
10745 3' -53.1 NC_002794.1 + 114820 0.67 0.983938
Target:  5'- cCCGCG-CGcUCUCCGgCGGccGAGucggcucGGAGGAc -3'
miRNA:   3'- -GGCGCaGU-AGAGGC-GCC--UUU-------UCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 115881 0.67 0.975534
Target:  5'- -gGCGUCcggggCgUCCGCGGAGcgcGGGGGGu -3'
miRNA:   3'- ggCGCAGua---G-AGGCGCCUUu--UCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 105825 0.67 0.975534
Target:  5'- aCCGgGUCgGUCgagCgaGCGGGAccGAGGGGAa -3'
miRNA:   3'- -GGCgCAG-UAGa--Gg-CGCCUU--UUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 116014 0.67 0.972938
Target:  5'- aCCGCGguggCgAUUggCGCGGGgaccGGAGAGGAg -3'
miRNA:   3'- -GGCGCa---G-UAGagGCGCCU----UUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 138768 0.67 0.972938
Target:  5'- gUCGCGgCGg-UCgGUGGAGGGGAGGGg -3'
miRNA:   3'- -GGCGCaGUagAGgCGCCUUUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 181922 0.67 0.972938
Target:  5'- cCCGCGcgacggcCGUCUCC-CGGGAGccgcAGAGGc -3'
miRNA:   3'- -GGCGCa------GUAGAGGcGCCUUU----UCUCCu -5'
10745 3' -53.1 NC_002794.1 + 123278 0.68 0.97015
Target:  5'- gCCGCG--GUCgUCGCGGGAGaccugcugcuGGAGGAg -3'
miRNA:   3'- -GGCGCagUAGaGGCGCCUUU----------UCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 45170 0.68 0.97015
Target:  5'- aCCGCGUCcagcagCgugCCGauguuguaaaUGGGAAAGAGGGu -3'
miRNA:   3'- -GGCGCAGua----Ga--GGC----------GCCUUUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 140193 0.68 0.967161
Target:  5'- aCgGCGUCGUCgaggggcgacCCGggcCGGAgGAAGAGGAg -3'
miRNA:   3'- -GgCGCAGUAGa---------GGC---GCCU-UUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 90515 0.68 0.960562
Target:  5'- gCCGCGcgcuucggcgcUCGUCUCCGCGGGu--GAc-- -3'
miRNA:   3'- -GGCGC-----------AGUAGAGGCGCCUuuuCUccu -5'
10745 3' -53.1 NC_002794.1 + 136994 0.68 0.960562
Target:  5'- -gGCGaUguUCUCCGCGGAcAGGAGc- -3'
miRNA:   3'- ggCGC-AguAGAGGCGCCUuUUCUCcu -5'
10745 3' -53.1 NC_002794.1 + 185470 0.69 0.953099
Target:  5'- gCCGCGggCGgcggCCGCGGc-GAGGGGAc -3'
miRNA:   3'- -GGCGCa-GUaga-GGCGCCuuUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 3752 0.69 0.940216
Target:  5'- aCGCG-CGUCaCgGCGGGGcGGGGGAg -3'
miRNA:   3'- gGCGCaGUAGaGgCGCCUUuUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 114761 0.69 0.940216
Target:  5'- gCCgGCGcCGgucCUCgGCGGcGAGGAGGAa -3'
miRNA:   3'- -GG-CGCaGUa--GAGgCGCCuUUUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.