Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10745 | 3' | -53.1 | NC_002794.1 | + | 129814 | 0.7 | 0.902019 |
Target: 5'- aCCGCGUCugccgcAUCaUCGCGGAAGucGAGGc -3' miRNA: 3'- -GGCGCAG------UAGaGGCGCCUUUu-CUCCu -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 115949 | 0.7 | 0.908174 |
Target: 5'- gCCGCGU-GUCgCCGgGGAccguGGGGGGGAg -3' miRNA: 3'- -GGCGCAgUAGaGGCgCCU----UUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 110559 | 0.7 | 0.914098 |
Target: 5'- uCCGCGUCGUCgCCGUcgucgaucGGGAAGGugccgaAGGGg -3' miRNA: 3'- -GGCGCAGUAGaGGCG--------CCUUUUC------UCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 124152 | 0.7 | 0.922001 |
Target: 5'- -aGCG--GUCUCCGCGGGgcccgggagagcgucGGGGAGGGg -3' miRNA: 3'- ggCGCagUAGAGGCGCCU---------------UUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 94267 | 0.7 | 0.930471 |
Target: 5'- gCGCGUCAUUUgCGCGGcgcggcccGAgcGGGGGg -3' miRNA: 3'- gGCGCAGUAGAgGCGCC--------UUuuCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 90253 | 0.7 | 0.930471 |
Target: 5'- gCGCGUgGUCUCCGCGc--GAGuGGu -3' miRNA: 3'- gGCGCAgUAGAGGCGCcuuUUCuCCu -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 21616 | 0.71 | 0.889025 |
Target: 5'- aCCGCGcCGUCgCCG-GGAGGAcgacGAGGAa -3' miRNA: 3'- -GGCGCaGUAGaGGCgCCUUUU----CUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 156189 | 0.71 | 0.882194 |
Target: 5'- aCGCGUCAUCggagUCGCcGGuc-GGAGGGc -3' miRNA: 3'- gGCGCAGUAGa---GGCG-CCuuuUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 121903 | 0.72 | 0.860415 |
Target: 5'- aCUGCGUCgacuggacGUCgcccgCCGCGGggGaAGAGGc -3' miRNA: 3'- -GGCGCAG--------UAGa----GGCGCCuuU-UCUCCu -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 123996 | 0.73 | 0.788542 |
Target: 5'- gCCG-GUCAUCUacgugaagcgggcggCCGCGGAAGAGAcGGu -3' miRNA: 3'- -GGCgCAGUAGA---------------GGCGCCUUUUCU-CCu -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 155751 | 0.74 | 0.728173 |
Target: 5'- gCGCGagAUgUUgGCGGGAGAGGGGAu -3' miRNA: 3'- gGCGCagUAgAGgCGCCUUUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 42571 | 0.74 | 0.766443 |
Target: 5'- cCCGCGgCGgacCCGCGGAcgGAGGAGGGc -3' miRNA: 3'- -GGCGCaGUagaGGCGCCU--UUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 99557 | 0.79 | 0.499057 |
Target: 5'- aCCGCGcgCGccCUCCGCGGgcGAGGGGGg -3' miRNA: 3'- -GGCGCa-GUa-GAGGCGCCuuUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 129594 | 0.86 | 0.215473 |
Target: 5'- uCCGCGUUAUCUCCGUG--AGAGAGGAa -3' miRNA: 3'- -GGCGCAGUAGAGGCGCcuUUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 129549 | 1.11 | 0.006034 |
Target: 5'- uCCGCGUCAUCUCCGCGGAAAAGAGGAa -3' miRNA: 3'- -GGCGCAGUAGAGGCGCCUUUUCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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