miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10745 3' -53.1 NC_002794.1 + 90253 0.7 0.930471
Target:  5'- gCGCGUgGUCUCCGCGc--GAGuGGu -3'
miRNA:   3'- gGCGCAgUAGAGGCGCcuuUUCuCCu -5'
10745 3' -53.1 NC_002794.1 + 94267 0.7 0.930471
Target:  5'- gCGCGUCAUUUgCGCGGcgcggcccGAgcGGGGGg -3'
miRNA:   3'- gGCGCAGUAGAgGCGCC--------UUuuCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 124152 0.7 0.922001
Target:  5'- -aGCG--GUCUCCGCGGGgcccgggagagcgucGGGGAGGGg -3'
miRNA:   3'- ggCGCagUAGAGGCGCCU---------------UUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 110559 0.7 0.914098
Target:  5'- uCCGCGUCGUCgCCGUcgucgaucGGGAAGGugccgaAGGGg -3'
miRNA:   3'- -GGCGCAGUAGaGGCG--------CCUUUUC------UCCU- -5'
10745 3' -53.1 NC_002794.1 + 115949 0.7 0.908174
Target:  5'- gCCGCGU-GUCgCCGgGGAccguGGGGGGGAg -3'
miRNA:   3'- -GGCGCAgUAGaGGCgCCU----UUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 129814 0.7 0.902019
Target:  5'- aCCGCGUCugccgcAUCaUCGCGGAAGucGAGGc -3'
miRNA:   3'- -GGCGCAG------UAGaGGCGCCUUUu-CUCCu -5'
10745 3' -53.1 NC_002794.1 + 21616 0.71 0.889025
Target:  5'- aCCGCGcCGUCgCCG-GGAGGAcgacGAGGAa -3'
miRNA:   3'- -GGCGCaGUAGaGGCgCCUUUU----CUCCU- -5'
10745 3' -53.1 NC_002794.1 + 156189 0.71 0.882194
Target:  5'- aCGCGUCAUCggagUCGCcGGuc-GGAGGGc -3'
miRNA:   3'- gGCGCAGUAGa---GGCG-CCuuuUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 121903 0.72 0.860415
Target:  5'- aCUGCGUCgacuggacGUCgcccgCCGCGGggGaAGAGGc -3'
miRNA:   3'- -GGCGCAG--------UAGa----GGCGCCuuU-UCUCCu -5'
10745 3' -53.1 NC_002794.1 + 123996 0.73 0.788542
Target:  5'- gCCG-GUCAUCUacgugaagcgggcggCCGCGGAAGAGAcGGu -3'
miRNA:   3'- -GGCgCAGUAGA---------------GGCGCCUUUUCU-CCu -5'
10745 3' -53.1 NC_002794.1 + 42571 0.74 0.766443
Target:  5'- cCCGCGgCGgacCCGCGGAcgGAGGAGGGc -3'
miRNA:   3'- -GGCGCaGUagaGGCGCCU--UUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 155751 0.74 0.728173
Target:  5'- gCGCGagAUgUUgGCGGGAGAGGGGAu -3'
miRNA:   3'- gGCGCagUAgAGgCGCCUUUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 99557 0.79 0.499057
Target:  5'- aCCGCGcgCGccCUCCGCGGgcGAGGGGGg -3'
miRNA:   3'- -GGCGCa-GUa-GAGGCGCCuuUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 129594 0.86 0.215473
Target:  5'- uCCGCGUUAUCUCCGUG--AGAGAGGAa -3'
miRNA:   3'- -GGCGCAGUAGAGGCGCcuUUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 129549 1.11 0.006034
Target:  5'- uCCGCGUCAUCUCCGCGGAAAAGAGGAa -3'
miRNA:   3'- -GGCGCAGUAGAGGCGCCUUUUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.