miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10745 3' -53.1 NC_002794.1 + 110559 0.7 0.914098
Target:  5'- uCCGCGUCGUCgCCGUcgucgaucGGGAAGGugccgaAGGGg -3'
miRNA:   3'- -GGCGCAGUAGaGGCG--------CCUUUUC------UCCU- -5'
10745 3' -53.1 NC_002794.1 + 105825 0.67 0.975534
Target:  5'- aCCGgGUCgGUCgagCgaGCGGGAccGAGGGGAa -3'
miRNA:   3'- -GGCgCAG-UAGa--Gg-CGCCUU--UUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 99557 0.79 0.499057
Target:  5'- aCCGCGcgCGccCUCCGCGGgcGAGGGGGg -3'
miRNA:   3'- -GGCGCa-GUa-GAGGCGCCuuUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 94267 0.7 0.930471
Target:  5'- gCGCGUCAUUUgCGCGGcgcggcccGAgcGGGGGg -3'
miRNA:   3'- gGCGCAGUAGAgGCGCC--------UUuuCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 90515 0.68 0.960562
Target:  5'- gCCGCGcgcuucggcgcUCGUCUCCGCGGGu--GAc-- -3'
miRNA:   3'- -GGCGC-----------AGUAGAGGCGCCUuuuCUccu -5'
10745 3' -53.1 NC_002794.1 + 90253 0.7 0.930471
Target:  5'- gCGCGUgGUCUCCGCGc--GAGuGGu -3'
miRNA:   3'- gGCGCAgUAGAGGCGCcuuUUCuCCu -5'
10745 3' -53.1 NC_002794.1 + 89517 0.66 0.987289
Target:  5'- aCCGCGUaggccaGagUCgGCGGAGGcagcagacgcgacGGAGGAg -3'
miRNA:   3'- -GGCGCAg-----UagAGgCGCCUUU-------------UCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 89290 0.66 0.991273
Target:  5'- aUCGUGUCGcUCUCCGUccgaucucGGAAAAcggucgagagaacGGGGAc -3'
miRNA:   3'- -GGCGCAGU-AGAGGCG--------CCUUUU-------------CUCCU- -5'
10745 3' -53.1 NC_002794.1 + 49767 0.67 0.98412
Target:  5'- aCGCGcUCGUCUCCcCGGAGgcGGuuGGGc -3'
miRNA:   3'- gGCGC-AGUAGAGGcGCCUUuuCU--CCU- -5'
10745 3' -53.1 NC_002794.1 + 45170 0.68 0.97015
Target:  5'- aCCGCGUCcagcagCgugCCGauguuguaaaUGGGAAAGAGGGu -3'
miRNA:   3'- -GGCGCAGua----Ga--GGC----------GCCUUUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 42571 0.74 0.766443
Target:  5'- cCCGCGgCGgacCCGCGGAcgGAGGAGGGc -3'
miRNA:   3'- -GGCGCaGUagaGGCGCCU--UUUCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 38701 0.66 0.987441
Target:  5'- gCCGCGcCGUCgagcgccccggCCGCcGAAAuGGGGAc -3'
miRNA:   3'- -GGCGCaGUAGa----------GGCGcCUUUuCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 21616 0.71 0.889025
Target:  5'- aCCGCGcCGUCgCCG-GGAGGAcgacGAGGAa -3'
miRNA:   3'- -GGCGCaGUAGaGGCgCCUUUU----CUCCU- -5'
10745 3' -53.1 NC_002794.1 + 12717 0.66 0.991387
Target:  5'- gCUGCG-CGU-UCCGCGGcGAcGAGGGc -3'
miRNA:   3'- -GGCGCaGUAgAGGCGCCuUUuCUCCU- -5'
10745 3' -53.1 NC_002794.1 + 3752 0.69 0.940216
Target:  5'- aCGCG-CGUCaCgGCGGGGcGGGGGAg -3'
miRNA:   3'- gGCGCaGUAGaGgCGCCUUuUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.