Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10745 | 3' | -53.1 | NC_002794.1 | + | 129549 | 1.11 | 0.006034 |
Target: 5'- uCCGCGUCAUCUCCGCGGAAAAGAGGAa -3' miRNA: 3'- -GGCGCAGUAGAGGCGCCUUUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 123278 | 0.68 | 0.97015 |
Target: 5'- gCCGCG--GUCgUCGCGGGAGaccugcugcuGGAGGAg -3' miRNA: 3'- -GGCGCagUAGaGGCGCCUUU----------UCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 140193 | 0.68 | 0.967161 |
Target: 5'- aCgGCGUCGUCgaggggcgacCCGggcCGGAgGAAGAGGAg -3' miRNA: 3'- -GgCGCAGUAGa---------GGC---GCCU-UUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 45170 | 0.68 | 0.97015 |
Target: 5'- aCCGCGUCcagcagCgugCCGauguuguaaaUGGGAAAGAGGGu -3' miRNA: 3'- -GGCGCAGua----Ga--GGC----------GCCUUUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 185470 | 0.69 | 0.953099 |
Target: 5'- gCCGCGggCGgcggCCGCGGc-GAGGGGAc -3' miRNA: 3'- -GGCGCa-GUaga-GGCGCCuuUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 136994 | 0.68 | 0.960562 |
Target: 5'- -gGCGaUguUCUCCGCGGAcAGGAGc- -3' miRNA: 3'- ggCGC-AguAGAGGCGCCUuUUCUCcu -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 90515 | 0.68 | 0.960562 |
Target: 5'- gCCGCGcgcuucggcgcUCGUCUCCGCGGGu--GAc-- -3' miRNA: 3'- -GGCGC-----------AGUAGAGGCGCCUuuuCUccu -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 3752 | 0.69 | 0.940216 |
Target: 5'- aCGCG-CGUCaCgGCGGGGcGGGGGAg -3' miRNA: 3'- gGCGCaGUAGaGgCGCCUUuUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 114761 | 0.69 | 0.940216 |
Target: 5'- gCCgGCGcCGgucCUCgGCGGcGAGGAGGAa -3' miRNA: 3'- -GG-CGCaGUa--GAGgCGCCuUUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 116014 | 0.67 | 0.972938 |
Target: 5'- aCCGCGguggCgAUUggCGCGGGgaccGGAGAGGAg -3' miRNA: 3'- -GGCGCa---G-UAGagGCGCCU----UUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 138768 | 0.67 | 0.972938 |
Target: 5'- gUCGCGgCGg-UCgGUGGAGGGGAGGGg -3' miRNA: 3'- -GGCGCaGUagAGgCGCCUUUUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 181922 | 0.67 | 0.972938 |
Target: 5'- cCCGCGcgacggcCGUCUCC-CGGGAGccgcAGAGGc -3' miRNA: 3'- -GGCGCa------GUAGAGGcGCCUUU----UCUCCu -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 89290 | 0.66 | 0.991273 |
Target: 5'- aUCGUGUCGcUCUCCGUccgaucucGGAAAAcggucgagagaacGGGGAc -3' miRNA: 3'- -GGCGCAGU-AGAGGCG--------CCUUUU-------------CUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 148009 | 0.66 | 0.988886 |
Target: 5'- uCCGCGUCGgcCUCgGuCGGuuGAucGGGGAu -3' miRNA: 3'- -GGCGCAGUa-GAGgC-GCC--UUuuCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 89517 | 0.66 | 0.987289 |
Target: 5'- aCCGCGUaggccaGagUCgGCGGAGGcagcagacgcgacGGAGGAg -3' miRNA: 3'- -GGCGCAg-----UagAGgCGCCUUU-------------UCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 38701 | 0.66 | 0.987441 |
Target: 5'- gCCGCGcCGUCgagcgccccggCCGCcGAAAuGGGGAc -3' miRNA: 3'- -GGCGCaGUAGa----------GGCGcCUUUuCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 49767 | 0.67 | 0.98412 |
Target: 5'- aCGCGcUCGUCUCCcCGGAGgcGGuuGGGc -3' miRNA: 3'- gGCGC-AGUAGAGGcGCCUUuuCU--CCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 115881 | 0.67 | 0.975534 |
Target: 5'- -gGCGUCcggggCgUCCGCGGAGcgcGGGGGGu -3' miRNA: 3'- ggCGCAGua---G-AGGCGCCUUu--UCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 105825 | 0.67 | 0.975534 |
Target: 5'- aCCGgGUCgGUCgagCgaGCGGGAccGAGGGGAa -3' miRNA: 3'- -GGCgCAG-UAGa--Gg-CGCCUU--UUCUCCU- -5' |
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10745 | 3' | -53.1 | NC_002794.1 | + | 114820 | 0.67 | 0.983938 |
Target: 5'- cCCGCG-CGcUCUCCGgCGGccGAGucggcucGGAGGAc -3' miRNA: 3'- -GGCGCaGU-AGAGGC-GCC--UUU-------UCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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