miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10745 5' -50.6 NC_002794.1 + 72846 0.66 0.998521
Target:  5'- ---aCCCgagaUCCGCGgc-UCUCCGUc -3'
miRNA:   3'- gaagGGGaaa-AGGCGCaauAGAGGCA- -5'
10745 5' -50.6 NC_002794.1 + 69000 0.66 0.998226
Target:  5'- gCUUCUCCUUccuccUCCGCGUgcgCgacgCCGg -3'
miRNA:   3'- -GAAGGGGAAa----AGGCGCAauaGa---GGCa -5'
10745 5' -50.6 NC_002794.1 + 95287 0.66 0.998226
Target:  5'- -cUCUCCUcUUCgGCGgcgGUCUCCc- -3'
miRNA:   3'- gaAGGGGAaAAGgCGCaa-UAGAGGca -5'
10745 5' -50.6 NC_002794.1 + 18673 0.66 0.997027
Target:  5'- gCUUCCUCggcugCCGcCGccGUCUCCGg -3'
miRNA:   3'- -GAAGGGGaaaa-GGC-GCaaUAGAGGCa -5'
10745 5' -50.6 NC_002794.1 + 12274 0.67 0.995904
Target:  5'- -gUCUCCgggUUUCCGCGccuggGUgUCCGa -3'
miRNA:   3'- gaAGGGGa--AAAGGCGCaa---UAgAGGCa -5'
10745 5' -50.6 NC_002794.1 + 41296 0.67 0.993588
Target:  5'- --gCUCCgacgcgggCCGCGUgggGUCUCCGa -3'
miRNA:   3'- gaaGGGGaaaa----GGCGCAa--UAGAGGCa -5'
10745 5' -50.6 NC_002794.1 + 146025 0.67 0.993588
Target:  5'- -gUCCCag--UCCGCucgAUCUCCGg -3'
miRNA:   3'- gaAGGGgaaaAGGCGcaaUAGAGGCa -5'
10745 5' -50.6 NC_002794.1 + 22373 0.68 0.988985
Target:  5'- --aCCCCgg-UCCcgauccggucggGCGUcGUCUCCGUa -3'
miRNA:   3'- gaaGGGGaaaAGG------------CGCAaUAGAGGCA- -5'
10745 5' -50.6 NC_002794.1 + 12045 0.69 0.97771
Target:  5'- cCUUCCCCUg--CCGg--UAUCUCUGg -3'
miRNA:   3'- -GAAGGGGAaaaGGCgcaAUAGAGGCa -5'
10745 5' -50.6 NC_002794.1 + 7522 0.69 0.97771
Target:  5'- uCUUCCgCUUUUCCcuGCGUggcccaagacuUGUCUCUGa -3'
miRNA:   3'- -GAAGGgGAAAAGG--CGCA-----------AUAGAGGCa -5'
10745 5' -50.6 NC_002794.1 + 119536 0.69 0.975211
Target:  5'- --aCCCCUcgUCCGCGgccGUCgCCGg -3'
miRNA:   3'- gaaGGGGAaaAGGCGCaa-UAGaGGCa -5'
10745 5' -50.6 NC_002794.1 + 66527 0.7 0.96316
Target:  5'- -gUCCCCgggUCCGCGaagGUCggcgCCGg -3'
miRNA:   3'- gaAGGGGaaaAGGCGCaa-UAGa---GGCa -5'
10745 5' -50.6 NC_002794.1 + 90245 0.7 0.9596
Target:  5'- -gUCCCCg---CgCGCGUgGUCUCCGc -3'
miRNA:   3'- gaAGGGGaaaaG-GCGCAaUAGAGGCa -5'
10745 5' -50.6 NC_002794.1 + 129539 0.88 0.216117
Target:  5'- gUUCCUCUUUUCCGCGUcAUCUCCGc -3'
miRNA:   3'- gAAGGGGAAAAGGCGCAaUAGAGGCa -5'
10745 5' -50.6 NC_002794.1 + 129583 1.09 0.013437
Target:  5'- gCUUCCCCUUUUCCGCGUUAUCUCCGUg -3'
miRNA:   3'- -GAAGGGGAAAAGGCGCAAUAGAGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.