miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 129140 0.65 0.64916
Target:  5'- cGGCGCgucgagACUGugucgcggcccucGCGGCCGaUGGCCGUUc -3'
miRNA:   3'- -CCGCG------UGGC-------------CGUCGGCgACCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 108525 0.65 0.64916
Target:  5'- uGCGCcacggccugAUCGGCAgcgucaucgaacuGCCGgUGGCCuGUCAc -3'
miRNA:   3'- cCGCG---------UGGCCGU-------------CGGCgACCGG-CAGU- -5'
10746 3' -63.8 NC_002794.1 + 96543 0.65 0.647244
Target:  5'- cGCGCcgacgaACCGGUcgacgaggagcgggAGCgGCUGGUCGUg- -3'
miRNA:   3'- cCGCG------UGGCCG--------------UCGgCGACCGGCAgu -5'
10746 3' -63.8 NC_002794.1 + 140679 0.66 0.64437
Target:  5'- gGGCGCaggucggugcgacggACCGGCcGCCGCgacccgGGaauggacguUCGUCAa -3'
miRNA:   3'- -CCGCG---------------UGGCCGuCGGCGa-----CC---------GGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 150539 0.66 0.640537
Target:  5'- -cCGgGCCGGC-GCCa-UGGCCGUCu -3'
miRNA:   3'- ccGCgUGGCCGuCGGcgACCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 183560 0.66 0.640537
Target:  5'- uGCGCGCCGaGCcGCCGacacgGGCCuUUAa -3'
miRNA:   3'- cCGCGUGGC-CGuCGGCga---CCGGcAGU- -5'
10746 3' -63.8 NC_002794.1 + 116087 0.66 0.640537
Target:  5'- cGGCGCGgCGGUcGUCGCcggGGUCGa-- -3'
miRNA:   3'- -CCGCGUgGCCGuCGGCGa--CCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 186856 0.66 0.640537
Target:  5'- gGGCGCuGCCGuGCAGCagcaGCgGGCuCGg-- -3'
miRNA:   3'- -CCGCG-UGGC-CGUCGg---CGaCCG-GCagu -5'
10746 3' -63.8 NC_002794.1 + 48597 0.66 0.640537
Target:  5'- cGGCGCGucgccgUCGGCgucGGCCucagacgcggaGC-GGCCGUCGg -3'
miRNA:   3'- -CCGCGU------GGCCG---UCGG-----------CGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 14516 0.66 0.630951
Target:  5'- cGGCGCuCgUGGC-GCCGCUcGGCCa--- -3'
miRNA:   3'- -CCGCGuG-GCCGuCGGCGA-CCGGcagu -5'
10746 3' -63.8 NC_002794.1 + 101649 0.66 0.630951
Target:  5'- gGGCGgGCgGGCGGCgGUUaGcCCGUCc -3'
miRNA:   3'- -CCGCgUGgCCGUCGgCGAcC-GGCAGu -5'
10746 3' -63.8 NC_002794.1 + 72161 0.66 0.630951
Target:  5'- cGCGCACaCGcGCuGCCGgUaGGCCG-CGa -3'
miRNA:   3'- cCGCGUG-GC-CGuCGGCgA-CCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 142790 0.66 0.630951
Target:  5'- cGGCGCGu--GCAGCCGCaguucGGCCGg-- -3'
miRNA:   3'- -CCGCGUggcCGUCGGCGa----CCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 101250 0.66 0.630951
Target:  5'- cGGCGCGCagcgGGgGGCCGCccccgGcGCCGg-- -3'
miRNA:   3'- -CCGCGUGg---CCgUCGGCGa----C-CGGCagu -5'
10746 3' -63.8 NC_002794.1 + 180695 0.66 0.630951
Target:  5'- cGGCGC-CCGGCGGgCGgaccaUGGCuCGgguUCAg -3'
miRNA:   3'- -CCGCGuGGCCGUCgGCg----ACCG-GC---AGU- -5'
10746 3' -63.8 NC_002794.1 + 151866 0.66 0.630951
Target:  5'- cGCGCAUCuGCAGcCCGUggaagUGGCCcUCGa -3'
miRNA:   3'- cCGCGUGGcCGUC-GGCG-----ACCGGcAGU- -5'
10746 3' -63.8 NC_002794.1 + 71231 0.66 0.630951
Target:  5'- cGCGUAgUGGCGGCCGgCgUGGaCCGgCAc -3'
miRNA:   3'- cCGCGUgGCCGUCGGC-G-ACC-GGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 96733 0.66 0.630951
Target:  5'- cGGCGacgacCGCCGGCgcgucucgcaAGCgGCcGGCgGUCGa -3'
miRNA:   3'- -CCGC-----GUGGCCG----------UCGgCGaCCGgCAGU- -5'
10746 3' -63.8 NC_002794.1 + 117519 0.66 0.626158
Target:  5'- gGGUGCGCCGGCGcaucugcuccagguuGCCGUgcagcagcucgagccGGUCGUgCAg -3'
miRNA:   3'- -CCGCGUGGCCGU---------------CGGCGa--------------CCGGCA-GU- -5'
10746 3' -63.8 NC_002794.1 + 181742 0.66 0.621366
Target:  5'- cGCGCgagcgGCCGGcCAGcCCGCUGacGCCGa-- -3'
miRNA:   3'- cCGCG-----UGGCC-GUC-GGCGAC--CGGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.