Results 1 - 20 of 242 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10746 | 3' | -63.8 | NC_002794.1 | + | 125345 | 1.1 | 0.000675 |
Target: 5'- cGGCGCACCGGCAGCCGCUGGCCGUCAg -3' miRNA: 3'- -CCGCGUGGCCGUCGGCGACCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 80421 | 0.83 | 0.056124 |
Target: 5'- uGGCGCcgggcggggccgccGCCGGCGGCCGCcGGcCCGUCGg -3' miRNA: 3'- -CCGCG--------------UGGCCGUCGGCGaCC-GGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 90320 | 0.82 | 0.061007 |
Target: 5'- cGCGCACUGGCcgcAGCUGgUGGCCGUCGg -3' miRNA: 3'- cCGCGUGGCCG---UCGGCgACCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 37759 | 0.79 | 0.105666 |
Target: 5'- cGGCgGCGCCGGCGGgaGC-GGCCGUCGu -3' miRNA: 3'- -CCG-CGUGGCCGUCggCGaCCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 139894 | 0.76 | 0.179733 |
Target: 5'- cGGUGaUGCgGGcCAGCCGCaGGCCGUCGg -3' miRNA: 3'- -CCGC-GUGgCC-GUCGGCGaCCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 142615 | 0.76 | 0.163487 |
Target: 5'- uGGCGCACgGGCgaguacagcgcgAGCCGCaggGGCuCGUCGg -3' miRNA: 3'- -CCGCGUGgCCG------------UCGGCGa--CCG-GCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 122994 | 0.76 | 0.163487 |
Target: 5'- uGGUGCggGCCGuGCugacgGGCCgGCUGGCCGUCGu -3' miRNA: 3'- -CCGCG--UGGC-CG-----UCGG-CGACCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 94829 | 0.76 | 0.179733 |
Target: 5'- gGGUGCugCGGCuGGaCCGCUGuGCCuGUCAc -3' miRNA: 3'- -CCGCGugGCCG-UC-GGCGAC-CGG-CAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 49405 | 0.75 | 0.206782 |
Target: 5'- cGGC-CA-CGGCGGCCGCggcggcggcGGCCGUCAc -3' miRNA: 3'- -CCGcGUgGCCGUCGGCGa--------CCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 145398 | 0.75 | 0.184013 |
Target: 5'- uGGCGCGCCGcGCGGCCuuaaagcgcggcGCgccGCCGUCGg -3' miRNA: 3'- -CCGCGUGGC-CGUCGG------------CGac-CGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 124542 | 0.75 | 0.184013 |
Target: 5'- uGGCGCugCGGCugaAGCCGUacaaGGCCGcCAu -3' miRNA: 3'- -CCGCGugGCCG---UCGGCGa---CCGGCaGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 189770 | 0.75 | 0.197856 |
Target: 5'- cGGUGCACCGcCAGCCGCgggaugcggaaaucGCCGUCGa -3' miRNA: 3'- -CCGCGUGGCcGUCGGCGac------------CGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 96181 | 0.75 | 0.188382 |
Target: 5'- uGGUGCACCGGC-GCCuGCcGGCCGa-- -3' miRNA: 3'- -CCGCGUGGCCGuCGG-CGaCCGGCagu -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 122295 | 0.74 | 0.226715 |
Target: 5'- gGGCGCGa-GGaguGCCcGCUGGCCGUCGc -3' miRNA: 3'- -CCGCGUggCCgu-CGG-CGACCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 149979 | 0.74 | 0.211619 |
Target: 5'- cGCGgACCGGCGGCCGCUaucuGCCG-CGc -3' miRNA: 3'- cCGCgUGGCCGUCGGCGAc---CGGCaGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 89232 | 0.74 | 0.237279 |
Target: 5'- cGUGCACauugaacuCGGCGgguaccGUCGCUGGCCGUCGa -3' miRNA: 3'- cCGCGUG--------GCCGU------CGGCGACCGGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 120051 | 0.74 | 0.216552 |
Target: 5'- cGGCgGCGgUGGCGGCCGCggaGGCCGa-- -3' miRNA: 3'- -CCG-CGUgGCCGUCGGCGa--CCGGCagu -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 49462 | 0.74 | 0.21113 |
Target: 5'- uGGCGCcgccgugACCGGCcGCCGCgGGuCUGUCGa -3' miRNA: 3'- -CCGCG-------UGGCCGuCGGCGaCC-GGCAGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 180884 | 0.74 | 0.231947 |
Target: 5'- cGGCGCGcCCGGUcucGGCCGCggacucGGCCG-CGg -3' miRNA: 3'- -CCGCGU-GGCCG---UCGGCGa-----CCGGCaGU- -5' |
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10746 | 3' | -63.8 | NC_002794.1 | + | 180004 | 0.74 | 0.216552 |
Target: 5'- cGGCGgGcCCGGCcacgacgacGGCCGC-GGCCGUCc -3' miRNA: 3'- -CCGCgU-GGCCG---------UCGGCGaCCGGCAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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