miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 125345 1.1 0.000675
Target:  5'- cGGCGCACCGGCAGCCGCUGGCCGUCAg -3'
miRNA:   3'- -CCGCGUGGCCGUCGGCGACCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 80421 0.83 0.056124
Target:  5'- uGGCGCcgggcggggccgccGCCGGCGGCCGCcGGcCCGUCGg -3'
miRNA:   3'- -CCGCG--------------UGGCCGUCGGCGaCC-GGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 90320 0.82 0.061007
Target:  5'- cGCGCACUGGCcgcAGCUGgUGGCCGUCGg -3'
miRNA:   3'- cCGCGUGGCCG---UCGGCgACCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 37759 0.79 0.105666
Target:  5'- cGGCgGCGCCGGCGGgaGC-GGCCGUCGu -3'
miRNA:   3'- -CCG-CGUGGCCGUCggCGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 122994 0.76 0.163487
Target:  5'- uGGUGCggGCCGuGCugacgGGCCgGCUGGCCGUCGu -3'
miRNA:   3'- -CCGCG--UGGC-CG-----UCGG-CGACCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 142615 0.76 0.163487
Target:  5'- uGGCGCACgGGCgaguacagcgcgAGCCGCaggGGCuCGUCGg -3'
miRNA:   3'- -CCGCGUGgCCG------------UCGGCGa--CCG-GCAGU- -5'
10746 3' -63.8 NC_002794.1 + 139894 0.76 0.179733
Target:  5'- cGGUGaUGCgGGcCAGCCGCaGGCCGUCGg -3'
miRNA:   3'- -CCGC-GUGgCC-GUCGGCGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 94829 0.76 0.179733
Target:  5'- gGGUGCugCGGCuGGaCCGCUGuGCCuGUCAc -3'
miRNA:   3'- -CCGCGugGCCG-UC-GGCGAC-CGG-CAGU- -5'
10746 3' -63.8 NC_002794.1 + 145398 0.75 0.184013
Target:  5'- uGGCGCGCCGcGCGGCCuuaaagcgcggcGCgccGCCGUCGg -3'
miRNA:   3'- -CCGCGUGGC-CGUCGG------------CGac-CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 124542 0.75 0.184013
Target:  5'- uGGCGCugCGGCugaAGCCGUacaaGGCCGcCAu -3'
miRNA:   3'- -CCGCGugGCCG---UCGGCGa---CCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 96181 0.75 0.188382
Target:  5'- uGGUGCACCGGC-GCCuGCcGGCCGa-- -3'
miRNA:   3'- -CCGCGUGGCCGuCGG-CGaCCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 189770 0.75 0.197856
Target:  5'- cGGUGCACCGcCAGCCGCgggaugcggaaaucGCCGUCGa -3'
miRNA:   3'- -CCGCGUGGCcGUCGGCGac------------CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 49405 0.75 0.206782
Target:  5'- cGGC-CA-CGGCGGCCGCggcggcggcGGCCGUCAc -3'
miRNA:   3'- -CCGcGUgGCCGUCGGCGa--------CCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 49462 0.74 0.21113
Target:  5'- uGGCGCcgccgugACCGGCcGCCGCgGGuCUGUCGa -3'
miRNA:   3'- -CCGCG-------UGGCCGuCGGCGaCC-GGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 149979 0.74 0.211619
Target:  5'- cGCGgACCGGCGGCCGCUaucuGCCG-CGc -3'
miRNA:   3'- cCGCgUGGCCGUCGGCGAc---CGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 120051 0.74 0.216552
Target:  5'- cGGCgGCGgUGGCGGCCGCggaGGCCGa-- -3'
miRNA:   3'- -CCG-CGUgGCCGUCGGCGa--CCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 180004 0.74 0.216552
Target:  5'- cGGCGgGcCCGGCcacgacgacGGCCGC-GGCCGUCc -3'
miRNA:   3'- -CCGCgU-GGCCG---------UCGGCGaCCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 111097 0.74 0.221584
Target:  5'- cGGCGgGcCCGGCGGgaCCG-UGGCCGUCGa -3'
miRNA:   3'- -CCGCgU-GGCCGUC--GGCgACCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 65998 0.74 0.226715
Target:  5'- gGGCggugaucccgGCACCgaGGCGGCCGC-GGUCGUCGc -3'
miRNA:   3'- -CCG----------CGUGG--CCGUCGGCGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 122295 0.74 0.226715
Target:  5'- gGGCGCGa-GGaguGCCcGCUGGCCGUCGc -3'
miRNA:   3'- -CCGCGUggCCgu-CGG-CGACCGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.