miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 180884 0.74 0.231947
Target:  5'- cGGCGCGcCCGGUcucGGCCGCggacucGGCCG-CGg -3'
miRNA:   3'- -CCGCGU-GGCCG---UCGGCGa-----CCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 89232 0.74 0.237279
Target:  5'- cGUGCACauugaacuCGGCGgguaccGUCGCUGGCCGUCGa -3'
miRNA:   3'- cCGCGUG--------GCCGU------CGGCGACCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 43520 0.73 0.248252
Target:  5'- aGCGCGCCGGUAGCuCGCgagcCCGUCc -3'
miRNA:   3'- cCGCGUGGCCGUCG-GCGacc-GGCAGu -5'
10746 3' -63.8 NC_002794.1 + 35728 0.73 0.248252
Target:  5'- uGGC-CuCCGGCGGCCGCgcgucucacUGGCUGUCc -3'
miRNA:   3'- -CCGcGuGGCCGUCGGCG---------ACCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 124256 0.73 0.248252
Target:  5'- cGCGCggguagucGCCGGcCAGCCGCcGcGCCGUCc -3'
miRNA:   3'- cCGCG--------UGGCC-GUCGGCGaC-CGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 77999 0.73 0.248252
Target:  5'- gGGCGUuguuCCGGCGGCgGC--GCCGUCGg -3'
miRNA:   3'- -CCGCGu---GGCCGUCGgCGacCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 58386 0.73 0.259642
Target:  5'- aGGCGCGCgGGCgccAGCUGCUGGagcaCGcCAa -3'
miRNA:   3'- -CCGCGUGgCCG---UCGGCGACCg---GCaGU- -5'
10746 3' -63.8 NC_002794.1 + 131034 0.73 0.259642
Target:  5'- cGGCGCgGCCGGCuGCCGCcgaUGuuCGUCGa -3'
miRNA:   3'- -CCGCG-UGGCCGuCGGCG---ACcgGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 112852 0.73 0.263728
Target:  5'- cGGCGCGCCGcaGCAGCUGCUgcagcgcgcccacgGGaUCGUCGu -3'
miRNA:   3'- -CCGCGUGGC--CGUCGGCGA--------------CC-GGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 184837 0.73 0.265495
Target:  5'- gGGCGCACCGcGCAGCgauaCGUgccggacGGCCGUUc -3'
miRNA:   3'- -CCGCGUGGC-CGUCG----GCGa------CCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 118274 0.73 0.271454
Target:  5'- cGGCgGCGCCGGCgucggGGaCCGCgccgGGCgCGUCGc -3'
miRNA:   3'- -CCG-CGUGGCCG-----UC-GGCGa---CCG-GCAGU- -5'
10746 3' -63.8 NC_002794.1 + 126252 0.73 0.271454
Target:  5'- uGGCGCGCgaGGuCGGCgGCUGGCUGgCGg -3'
miRNA:   3'- -CCGCGUGg-CC-GUCGgCGACCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 49014 0.73 0.272056
Target:  5'- cGCGC-CgCGGCGGCCGCggcgucguccggcgcGGUCGUCAg -3'
miRNA:   3'- cCGCGuG-GCCGUCGGCGa--------------CCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 50579 0.73 0.27752
Target:  5'- cGGCGUGCgCGGCGGCUgGgUGGCCGg-- -3'
miRNA:   3'- -CCGCGUG-GCCGUCGG-CgACCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 60091 0.73 0.27752
Target:  5'- aGGUGCuCCa-CGGCCaGCUGGCCGUCu -3'
miRNA:   3'- -CCGCGuGGccGUCGG-CGACCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 126402 0.72 0.283695
Target:  5'- cGGCGUGCgCGGCGGUCGCgaucUGGCUgcugGUCGa -3'
miRNA:   3'- -CCGCGUG-GCCGUCGGCG----ACCGG----CAGU- -5'
10746 3' -63.8 NC_002794.1 + 26641 0.72 0.283695
Target:  5'- cGCGCAcCCGGaCGGCgGCcGGCuCGUCGg -3'
miRNA:   3'- cCGCGU-GGCC-GUCGgCGaCCG-GCAGU- -5'
10746 3' -63.8 NC_002794.1 + 186928 0.72 0.288081
Target:  5'- aGUGCGCCgccaccgccgccacGGCccccgGGCCGCUGGCCGcCGc -3'
miRNA:   3'- cCGCGUGG--------------CCG-----UCGGCGACCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 53734 0.72 0.289977
Target:  5'- cGCGCcaucGCCGGCcGCCGCUGccGCCGcCGc -3'
miRNA:   3'- cCGCG----UGGCCGuCGGCGAC--CGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 186985 0.72 0.289977
Target:  5'- cGCGCACCaGCuccGCCgGCUGcGUCGUCAg -3'
miRNA:   3'- cCGCGUGGcCGu--CGG-CGAC-CGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.