miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 14474 0.66 0.621366
Target:  5'- cGGCGCGCCGcgcucgcuguucGCGGCgGC-GGCCc--- -3'
miRNA:   3'- -CCGCGUGGC------------CGUCGgCGaCCGGcagu -5'
10746 3' -63.8 NC_002794.1 + 55624 0.66 0.621366
Target:  5'- cGUGCacGCUGGcCAGCaCGCgGGCCGgCAg -3'
miRNA:   3'- cCGCG--UGGCC-GUCG-GCGaCCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 141549 0.66 0.621366
Target:  5'- aGGCGCgaauccgccACCcGCGGCCGC-GGCC-UCc -3'
miRNA:   3'- -CCGCG---------UGGcCGUCGGCGaCCGGcAGu -5'
10746 3' -63.8 NC_002794.1 + 141445 0.66 0.621366
Target:  5'- gGGgGCGCCGGgAGCgGCgcGG-CGUCc -3'
miRNA:   3'- -CCgCGUGGCCgUCGgCGa-CCgGCAGu -5'
10746 3' -63.8 NC_002794.1 + 103926 0.66 0.621366
Target:  5'- -aCGCGgCGaGCAGCgCGCgUGGCCGcCGc -3'
miRNA:   3'- ccGCGUgGC-CGUCG-GCG-ACCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 111601 0.66 0.621366
Target:  5'- cGGgGUgaucucccagGCCGGCggGGCCGCcgcGGCCGcCGc -3'
miRNA:   3'- -CCgCG----------UGGCCG--UCGGCGa--CCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 142897 0.66 0.621366
Target:  5'- aGGCGUGcCCGGCGuccuCCGggGGCCGgagCAg -3'
miRNA:   3'- -CCGCGU-GGCCGUc---GGCgaCCGGCa--GU- -5'
10746 3' -63.8 NC_002794.1 + 186389 0.66 0.621366
Target:  5'- cGcCGCAgCcGCAGCCGC-GGCCG-CAc -3'
miRNA:   3'- cC-GCGUgGcCGUCGGCGaCCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 70260 0.66 0.621366
Target:  5'- cGCGCAgcgaCGGaGGCCGCgaaGGCCGgagagCAg -3'
miRNA:   3'- cCGCGUg---GCCgUCGGCGa--CCGGCa----GU- -5'
10746 3' -63.8 NC_002794.1 + 181742 0.66 0.621366
Target:  5'- cGCGCgagcgGCCGGcCAGcCCGCUGacGCCGa-- -3'
miRNA:   3'- cCGCG-----UGGCC-GUC-GGCGAC--CGGCagu -5'
10746 3' -63.8 NC_002794.1 + 190215 0.66 0.621366
Target:  5'- cGCGCACCcGcCGGgCGCUccGGUCGUCc -3'
miRNA:   3'- cCGCGUGGcC-GUCgGCGA--CCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 93018 0.66 0.618492
Target:  5'- uGGUGCAgCGGCggaacccggugcgcGGCUGCcUGGCCuUCc -3'
miRNA:   3'- -CCGCGUgGCCG--------------UCGGCG-ACCGGcAGu -5'
10746 3' -63.8 NC_002794.1 + 99696 0.66 0.618492
Target:  5'- uGCGCGCUGGC-GCCGCggaUguucuuucgcgaccGGCCGUa- -3'
miRNA:   3'- cCGCGUGGCCGuCGGCG---A--------------CCGGCAgu -5'
10746 3' -63.8 NC_002794.1 + 48064 0.66 0.615618
Target:  5'- cGGCGCugaugGCCGGCcagcgggagcagccGCCGCUcGCCGgcgUCAg -3'
miRNA:   3'- -CCGCG-----UGGCCGu-------------CGGCGAcCGGC---AGU- -5'
10746 3' -63.8 NC_002794.1 + 180373 0.66 0.611788
Target:  5'- cGGCGCgaggacgcuGCCGGcCAGCUGCUcgaacgGGaccgaCGUCGc -3'
miRNA:   3'- -CCGCG---------UGGCC-GUCGGCGA------CCg----GCAGU- -5'
10746 3' -63.8 NC_002794.1 + 139550 0.66 0.611788
Target:  5'- aGGUGCGgugguagauCCGGCGGCUGCUguuuuguuuccGGCgGUgGa -3'
miRNA:   3'- -CCGCGU---------GGCCGUCGGCGA-----------CCGgCAgU- -5'
10746 3' -63.8 NC_002794.1 + 112456 0.66 0.611788
Target:  5'- cGGCGCAgcguCCGGUAGCgGCUcugGaGCUGcUCGu -3'
miRNA:   3'- -CCGCGU----GGCCGUCGgCGA---C-CGGC-AGU- -5'
10746 3' -63.8 NC_002794.1 + 60647 0.66 0.611788
Target:  5'- cGGCgGCGCCGGCcacccGGCgCGCgccGCCGcCGc -3'
miRNA:   3'- -CCG-CGUGGCCG-----UCG-GCGac-CGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 100743 0.66 0.611788
Target:  5'- cGCGCGCgGaGCGcGUcuauCGCUGGCCgGUCGc -3'
miRNA:   3'- cCGCGUGgC-CGU-CG----GCGACCGG-CAGU- -5'
10746 3' -63.8 NC_002794.1 + 114191 0.66 0.602224
Target:  5'- aGGCGCAgCGGC-GCCaC-GGCCGg-- -3'
miRNA:   3'- -CCGCGUgGCCGuCGGcGaCCGGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.