miRNA display CGI


Results 41 - 60 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 91142 0.66 0.602224
Target:  5'- aGGCGCGgaCGGU-GCUGCUGGgCGcCGu -3'
miRNA:   3'- -CCGCGUg-GCCGuCGGCGACCgGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 102056 0.66 0.602224
Target:  5'- cGCGCGCUucuucgagccgGGCGaccuGCCGCgGGCCGaCGa -3'
miRNA:   3'- cCGCGUGG-----------CCGU----CGGCGaCCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 114191 0.66 0.602224
Target:  5'- aGGCGCAgCGGC-GCCaC-GGCCGg-- -3'
miRNA:   3'- -CCGCGUgGCCGuCGGcGaCCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 143750 0.66 0.602224
Target:  5'- cGCGcCGCCGGgGGgcuCCGCUcGUCGUCGg -3'
miRNA:   3'- cCGC-GUGGCCgUC---GGCGAcCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 80493 0.66 0.602224
Target:  5'- uGGCGCaccACCGGCAcgucuucugcGCCGC-GGCgCG-CGa -3'
miRNA:   3'- -CCGCG---UGGCCGU----------CGGCGaCCG-GCaGU- -5'
10746 3' -63.8 NC_002794.1 + 95837 0.66 0.601268
Target:  5'- aGCgGCGgCGGCGGCCggggaggcggcggGCgGGCCGUUu -3'
miRNA:   3'- cCG-CGUgGCCGUCGG-------------CGaCCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 189818 0.66 0.599358
Target:  5'- gGGCGCGCCacgaucaaccGCcacagcggggucucGGCCGCgGaGCCGUCGg -3'
miRNA:   3'- -CCGCGUGGc---------CG--------------UCGGCGaC-CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 120741 0.66 0.592678
Target:  5'- cGGCGguCCGGgAGCgcagacucUGCUGGCCc--- -3'
miRNA:   3'- -CCGCguGGCCgUCG--------GCGACCGGcagu -5'
10746 3' -63.8 NC_002794.1 + 14570 0.66 0.592678
Target:  5'- aGGCGaGCCGGCcGaCCGaagcgGGCCGUg- -3'
miRNA:   3'- -CCGCgUGGCCGuC-GGCga---CCGGCAgu -5'
10746 3' -63.8 NC_002794.1 + 33755 0.66 0.592678
Target:  5'- uGGCGCACCuguacGGCgAGCUGCUGaaGCaCGaCAg -3'
miRNA:   3'- -CCGCGUGG-----CCG-UCGGCGAC--CG-GCaGU- -5'
10746 3' -63.8 NC_002794.1 + 66043 0.66 0.592678
Target:  5'- cGuCGgGCCGGCAGCgGC-GGCCuGUUc -3'
miRNA:   3'- cC-GCgUGGCCGUCGgCGaCCGG-CAGu -5'
10746 3' -63.8 NC_002794.1 + 183357 0.66 0.592678
Target:  5'- aGCGCGCCGGaccccagguccCGGCCGUgccCCGUCc -3'
miRNA:   3'- cCGCGUGGCC-----------GUCGGCGaccGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 115334 0.66 0.592678
Target:  5'- cGGCGU-CCGG--GCCGCUcGGCaCGUCc -3'
miRNA:   3'- -CCGCGuGGCCguCGGCGA-CCG-GCAGu -5'
10746 3' -63.8 NC_002794.1 + 55208 0.66 0.591725
Target:  5'- cGGCGCggcggagGCCGGCGGUCGa--GCCGaCGa -3'
miRNA:   3'- -CCGCG-------UGGCCGUCGGCgacCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 68036 0.67 0.583159
Target:  5'- aGGCuGCuguCCGGaCAGCCGUUGaccGCCcUCAa -3'
miRNA:   3'- -CCG-CGu--GGCC-GUCGGCGAC---CGGcAGU- -5'
10746 3' -63.8 NC_002794.1 + 184951 0.67 0.583159
Target:  5'- aGCuGCGCCGGCccgcgcAGCCGCUcGUCGggCAg -3'
miRNA:   3'- cCG-CGUGGCCG------UCGGCGAcCGGCa-GU- -5'
10746 3' -63.8 NC_002794.1 + 23953 0.67 0.583159
Target:  5'- cGGCGCACuUGGCuccgAGCCaGCggcgaGGCCGg-- -3'
miRNA:   3'- -CCGCGUG-GCCG----UCGG-CGa----CCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 111647 0.67 0.583159
Target:  5'- cGgGCGCC-GCGGCCGC-GGCCacgcccGUCGg -3'
miRNA:   3'- cCgCGUGGcCGUCGGCGaCCGG------CAGU- -5'
10746 3' -63.8 NC_002794.1 + 90663 0.67 0.583159
Target:  5'- -uCGCGCCguuggGGcCGGCCGCgUGGCUGUUc -3'
miRNA:   3'- ccGCGUGG-----CC-GUCGGCG-ACCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 58753 0.67 0.583159
Target:  5'- cGgGCAgCUGGCGgaggagccGCUGCUGGCCuacGUCAg -3'
miRNA:   3'- cCgCGU-GGCCGU--------CGGCGACCGG---CAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.