miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 268 0.68 0.526873
Target:  5'- cGCGCGCggacgcgaggaCGGCGGCC-CUGGCgCGcCGa -3'
miRNA:   3'- cCGCGUG-----------GCCGUCGGcGACCG-GCaGU- -5'
10746 3' -63.8 NC_002794.1 + 1277 0.72 0.296367
Target:  5'- aGC-CACCGGCcuucuaaggaccGGCCGCUGGCCa--- -3'
miRNA:   3'- cCGcGUGGCCG------------UCGGCGACCGGcagu -5'
10746 3' -63.8 NC_002794.1 + 12228 0.68 0.481577
Target:  5'- cGGCgGCGCCGGCGGCgccgucCGCgGcGCCGaUCc -3'
miRNA:   3'- -CCG-CGUGGCCGUCG------GCGaC-CGGC-AGu -5'
10746 3' -63.8 NC_002794.1 + 13117 0.69 0.438254
Target:  5'- cGGCGggguCGCCGcGCGGCuCGCUcgcgcgGGUCGUCGc -3'
miRNA:   3'- -CCGC----GUGGC-CGUCG-GCGA------CCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 14197 0.7 0.413356
Target:  5'- aGCGUcCCGGC--CCGCUGGCCGcCc -3'
miRNA:   3'- cCGCGuGGCCGucGGCGACCGGCaGu -5'
10746 3' -63.8 NC_002794.1 + 14474 0.66 0.621366
Target:  5'- cGGCGCGCCGcgcucgcuguucGCGGCgGC-GGCCc--- -3'
miRNA:   3'- -CCGCGUGGC------------CGUCGgCGaCCGGcagu -5'
10746 3' -63.8 NC_002794.1 + 14516 0.66 0.630951
Target:  5'- cGGCGCuCgUGGC-GCCGCUcGGCCa--- -3'
miRNA:   3'- -CCGCGuG-GCCGuCGGCGA-CCGGcagu -5'
10746 3' -63.8 NC_002794.1 + 14570 0.66 0.592678
Target:  5'- aGGCGaGCCGGCcGaCCGaagcgGGCCGUg- -3'
miRNA:   3'- -CCGCgUGGCCGuC-GGCga---CCGGCAgu -5'
10746 3' -63.8 NC_002794.1 + 14603 0.71 0.351424
Target:  5'- aGCGCGCCgGGCA-CCGCgacggGGCCGg-- -3'
miRNA:   3'- cCGCGUGG-CCGUcGGCGa----CCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 15007 0.7 0.413356
Target:  5'- gGGCGguCuCGGCuGGCUGCUcGUCGUCAc -3'
miRNA:   3'- -CCGCguG-GCCG-UCGGCGAcCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 16290 0.71 0.366275
Target:  5'- uGGCGgagucuaGCCuGGCGGCCGC-GGCCGg-- -3'
miRNA:   3'- -CCGCg------UGG-CCGUCGGCGaCCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 16373 0.68 0.505819
Target:  5'- cGCGUGCaCGGCGGCCggguccgaacccaaGC-GGUCGUCGa -3'
miRNA:   3'- cCGCGUG-GCCGUCGG--------------CGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 19537 0.7 0.413356
Target:  5'- cGGCGCggcccGCCGGUgucggacccGGaCUGCUucgaGGCCGUCAc -3'
miRNA:   3'- -CCGCG-----UGGCCG---------UC-GGCGA----CCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 20974 0.67 0.57367
Target:  5'- aGCuCACCGGCAGCgGC-GGCgG-CAg -3'
miRNA:   3'- cCGcGUGGCCGUCGgCGaCCGgCaGU- -5'
10746 3' -63.8 NC_002794.1 + 21942 0.69 0.421559
Target:  5'- cGGCGCucgucgaagGCCGuCGGCCGCUcccgcgGcGCCGUCGu -3'
miRNA:   3'- -CCGCG---------UGGCcGUCGGCGA------C-CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 22923 0.67 0.57367
Target:  5'- cGGcCGCcaaACCGGCAcCCaucgGCUGGCCGaCGg -3'
miRNA:   3'- -CC-GCG---UGGCCGUcGG----CGACCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 23953 0.67 0.583159
Target:  5'- cGGCGCACuUGGCuccgAGCCaGCggcgaGGCCGg-- -3'
miRNA:   3'- -CCGCGUG-GCCG----UCGG-CGa----CCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 26641 0.72 0.283695
Target:  5'- cGCGCAcCCGGaCGGCgGCcGGCuCGUCGg -3'
miRNA:   3'- cCGCGU-GGCC-GUCGgCGaCCG-GCAGU- -5'
10746 3' -63.8 NC_002794.1 + 28663 0.68 0.472742
Target:  5'- cGgGCcCCGGaaccGCCGCcggUGGCCGUCGc -3'
miRNA:   3'- cCgCGuGGCCgu--CGGCG---ACCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 29212 0.72 0.309476
Target:  5'- cGGCGguC-GGCGGCCGUcGGCCGcCGa -3'
miRNA:   3'- -CCGCguGgCCGUCGGCGaCCGGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.