miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 32288 0.69 0.446743
Target:  5'- aGCGaCGCCgccgccgccgcGGCGGCCGCgccGGCCG-CGg -3'
miRNA:   3'- cCGC-GUGG-----------CCGUCGGCGa--CCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 32842 0.67 0.554806
Target:  5'- cGGCuCAUCGGUAGCgGCagcGGCCGa-- -3'
miRNA:   3'- -CCGcGUGGCCGUCGgCGa--CCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 33317 0.68 0.481577
Target:  5'- cGGCGUccauCCGccacacgcuGCAGUCGCUGGUCGgCAa -3'
miRNA:   3'- -CCGCGu---GGC---------CGUCGGCGACCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 33755 0.66 0.592678
Target:  5'- uGGCGCACCuguacGGCgAGCUGCUGaaGCaCGaCAg -3'
miRNA:   3'- -CCGCGUGG-----CCG-UCGGCGAC--CG-GCaGU- -5'
10746 3' -63.8 NC_002794.1 + 34072 0.67 0.554806
Target:  5'- cGCcguuccCGCCGGCGGCCGggcaGCCGUCGg -3'
miRNA:   3'- cCGc-----GUGGCCGUCGGCgac-CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 35728 0.73 0.248252
Target:  5'- uGGC-CuCCGGCGGCCGCgcgucucacUGGCUGUCc -3'
miRNA:   3'- -CCGcGuGGCCGUCGGCG---------ACCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 36212 0.71 0.351424
Target:  5'- cGGC-CACCagcaGGUAGCCGCaGGCCcgGUCGa -3'
miRNA:   3'- -CCGcGUGG----CCGUCGGCGaCCGG--CAGU- -5'
10746 3' -63.8 NC_002794.1 + 37759 0.79 0.105666
Target:  5'- cGGCgGCGCCGGCGGgaGC-GGCCGUCGu -3'
miRNA:   3'- -CCG-CGUGGCCGUCggCGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 37895 0.68 0.517677
Target:  5'- cGGUgGCGgCGGCAGCgGCUcGCCGgccUCAa -3'
miRNA:   3'- -CCG-CGUgGCCGUCGgCGAcCGGC---AGU- -5'
10746 3' -63.8 NC_002794.1 + 43520 0.73 0.248252
Target:  5'- aGCGCGCCGGUAGCuCGCgagcCCGUCc -3'
miRNA:   3'- cCGCGUGGCCGUCG-GCGacc-GGCAGu -5'
10746 3' -63.8 NC_002794.1 + 43606 0.68 0.499482
Target:  5'- uGUGCACCaGGCAGCagGacgUGGCCGcCAg -3'
miRNA:   3'- cCGCGUGG-CCGUCGg-Cg--ACCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 44011 0.72 0.302867
Target:  5'- cGGCGCgGCCGGCGuCCGCaGaCCGUCGc -3'
miRNA:   3'- -CCGCG-UGGCCGUcGGCGaCcGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 46239 0.72 0.316194
Target:  5'- cGCuCGCCGGCGGCucgucCGCUuccucgGGCCGUCGa -3'
miRNA:   3'- cCGcGUGGCCGUCG-----GCGA------CCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 48064 0.66 0.615618
Target:  5'- cGGCGCugaugGCCGGCcagcgggagcagccGCCGCUcGCCGgcgUCAg -3'
miRNA:   3'- -CCGCG-----UGGCCGu-------------CGGCGAcCGGC---AGU- -5'
10746 3' -63.8 NC_002794.1 + 48597 0.66 0.640537
Target:  5'- cGGCGCGucgccgUCGGCgucGGCCucagacgcggaGC-GGCCGUCGg -3'
miRNA:   3'- -CCGCGU------GGCCG---UCGG-----------CGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 49014 0.73 0.272056
Target:  5'- cGCGC-CgCGGCGGCCGCggcgucguccggcgcGGUCGUCAg -3'
miRNA:   3'- cCGCGuG-GCCGUCGGCGa--------------CCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 49114 0.71 0.329958
Target:  5'- cGGCguccuGCACCGGgacCGGCCGgaGGUCGUUg -3'
miRNA:   3'- -CCG-----CGUGGCC---GUCGGCgaCCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 49405 0.75 0.206782
Target:  5'- cGGC-CA-CGGCGGCCGCggcggcggcGGCCGUCAc -3'
miRNA:   3'- -CCGcGUgGCCGUCGGCGa--------CCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 49462 0.74 0.21113
Target:  5'- uGGCGCcgccgugACCGGCcGCCGCgGGuCUGUCGa -3'
miRNA:   3'- -CCGCG-------UGGCCGuCGGCGaCC-GGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 50579 0.73 0.27752
Target:  5'- cGGCGUGCgCGGCGGCUgGgUGGCCGg-- -3'
miRNA:   3'- -CCGCGUG-GCCGUCGG-CgACCGGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.