miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10746 3' -63.8 NC_002794.1 + 193581 0.7 0.39725
Target:  5'- -aCGCGCCGGUGGCgGCUcaCCGUCGu -3'
miRNA:   3'- ccGCGUGGCCGUCGgCGAccGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 193286 0.67 0.545442
Target:  5'- cGUGCGCCGGUAGUCGCcGuCCGcUCc -3'
miRNA:   3'- cCGCGUGGCCGUCGGCGaCcGGC-AGu -5'
10746 3' -63.8 NC_002794.1 + 193056 0.71 0.323022
Target:  5'- aGCGC-CCGcacCGGCUGCgGGCCGUCGc -3'
miRNA:   3'- cCGCGuGGCc--GUCGGCGaCCGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 191666 0.69 0.44589
Target:  5'- gGGacgGCGCCGGCAGCgGCggcGGCgugcccuCGUCGc -3'
miRNA:   3'- -CCg--CGUGGCCGUCGgCGa--CCG-------GCAGU- -5'
10746 3' -63.8 NC_002794.1 + 190215 0.66 0.621366
Target:  5'- cGCGCACCcGcCGGgCGCUccGGUCGUCc -3'
miRNA:   3'- cCGCGUGGcC-GUCgGCGA--CCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 189818 0.66 0.599358
Target:  5'- gGGCGCGCCacgaucaaccGCcacagcggggucucGGCCGCgGaGCCGUCGg -3'
miRNA:   3'- -CCGCGUGGc---------CG--------------UCGGCGaC-CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 189770 0.75 0.197856
Target:  5'- cGGUGCACCGcCAGCCGCgggaugcggaaaucGCCGUCGa -3'
miRNA:   3'- -CCGCGUGGCcGUCGGCGac------------CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 189637 0.69 0.429859
Target:  5'- uGGCuaGCUGGCuggcugacuAGCCgGCUGGCCGa-- -3'
miRNA:   3'- -CCGcgUGGCCG---------UCGG-CGACCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 188780 0.69 0.421559
Target:  5'- cGGUGCAgCGGUAGCgGCcGGCCc--- -3'
miRNA:   3'- -CCGCGUgGCCGUCGgCGaCCGGcagu -5'
10746 3' -63.8 NC_002794.1 + 188346 0.67 0.539848
Target:  5'- cGGCGCcgucgcgcccguccgGCCGGCGGCgGCcgaGGgCGUUc -3'
miRNA:   3'- -CCGCG---------------UGGCCGUCGgCGa--CCgGCAGu -5'
10746 3' -63.8 NC_002794.1 + 188254 0.71 0.351424
Target:  5'- cGGCgGCGgCGGUAGCgGCgGGCCGg-- -3'
miRNA:   3'- -CCG-CGUgGCCGUCGgCGaCCGGCagu -5'
10746 3' -63.8 NC_002794.1 + 187842 0.67 0.554806
Target:  5'- cGGCGCGCCGaGggcucugccCAGCCGCgcgcGGCuCGcCGc -3'
miRNA:   3'- -CCGCGUGGC-C---------GUCGGCGa---CCG-GCaGU- -5'
10746 3' -63.8 NC_002794.1 + 187685 0.71 0.323022
Target:  5'- uGCGggUCGaGCGGcCCGUUGGCCGUCu -3'
miRNA:   3'- cCGCguGGC-CGUC-GGCGACCGGCAGu -5'
10746 3' -63.8 NC_002794.1 + 187478 0.67 0.554806
Target:  5'- cGCGCGCCgGGCcgaggacgaGGCCGCgcaGGCgGcCAg -3'
miRNA:   3'- cCGCGUGG-CCG---------UCGGCGa--CCGgCaGU- -5'
10746 3' -63.8 NC_002794.1 + 187065 0.67 0.536129
Target:  5'- cGGCcCGCCaGguGCCGCaGGCUGcUCGc -3'
miRNA:   3'- -CCGcGUGGcCguCGGCGaCCGGC-AGU- -5'
10746 3' -63.8 NC_002794.1 + 186985 0.72 0.289977
Target:  5'- cGCGCACCaGCuccGCCgGCUGcGUCGUCAg -3'
miRNA:   3'- cCGCGUGGcCGu--CGG-CGAC-CGGCAGU- -5'
10746 3' -63.8 NC_002794.1 + 186928 0.72 0.288081
Target:  5'- aGUGCGCCgccaccgccgccacGGCccccgGGCCGCUGGCCGcCGc -3'
miRNA:   3'- cCGCGUGG--------------CCG-----UCGGCGACCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 186856 0.66 0.640537
Target:  5'- gGGCGCuGCCGuGCAGCagcaGCgGGCuCGg-- -3'
miRNA:   3'- -CCGCG-UGGC-CGUCGg---CGaCCG-GCagu -5'
10746 3' -63.8 NC_002794.1 + 186389 0.66 0.621366
Target:  5'- cGcCGCAgCcGCAGCCGC-GGCCG-CAc -3'
miRNA:   3'- cC-GCGUgGcCGUCGGCGaCCGGCaGU- -5'
10746 3' -63.8 NC_002794.1 + 186280 0.71 0.366275
Target:  5'- uGGCGCGgCGGCA-CCGCggccaggcGGCCgGUCGc -3'
miRNA:   3'- -CCGCGUgGCCGUcGGCGa-------CCGG-CAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.